NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38841.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38841.1 Public Mus musculus 4 Skint10 23 108 98 CCDS HistoryNCBI Gene:230613Re-query CCDS DB by CCDS ID:38841.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38841.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060327.3 ENSMUSP00000058838.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060327.3Link to Ensembl Protein Viewer:ENSMUSP00000058838.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000060327Re-query CCDS DB by Protein ID:ENSMUSP00000058838
Original member Current member NCBI NM_177668.2 NP_808336.1 Accepted alive Link to Nucleotide Sequence:NM_177668.2Link to Protein Sequence:NP_808336.1Re-query CCDS DB by Nucleotide ID:NM_177668Re-query CCDS DB by Protein ID:NP_808336Link to BLAST:NP_808336.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808336.1 354 A7TZG1 354 100% 0 0

Chromosomal Locations for CCDS 38841.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 112711454 112711689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112715769 112715891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112727603 112727707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112728817 112728987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112746559 112746840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112765037 112765117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112774755 112774821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGTTTCTGAGGACACAGATGGAGCAAAGTCAAGCTGACATTTTTGCATTGATTAAACCACATTTTGGTG
TGATGGAGTCTTCAGCTTCCTATTTACCTGGATTCTTTATGACCTTCCTTCTCTTACAGACCACAGTACT
CACCCAAGCTATGAGCTTGGATATACAGATTAACATTCAGGTTCCAGATACAGAAGGGGTACTCTTGGAG
TGTACTTCAGGAAGCTTGATCCCACCTGCTGAGATGACATGGAGAGACAGCAAAGGGAATATAATTCCAC
ATTCAACCACATTTGACTCTCAGGATAGAGCTGGGTTATTGTATTTGAAAAGCAGCATTCTTCTGAAGAA
CAGAGTTCAAAGTCCTATTACTTGCTCCATTTACAATGTAACAACTAATCGGGAGAAAAAAAGAAGCGTT
GTCCTACCAGATATCCTATTCAAATCGGAATATATGTCATTGATGTCAAACAAATTTTCATGTCCTTTAA
CATATTTATTCATTATAATTTTTCTTAATTGTCTCAAAGGAATGCTTGATTTCTGTTGTCTCAAAGGAAA
ACCTGTTTATTTCAGAGAACTAATCAATAAAATCAAGGAAGTTTTGAATATTAAAATGAGAGCTTGCTGT
ACACTTATCTGGGAGTTTCTACTGATAGTTTTGTATATTGCGTTCCTCCCTTTCTACTTGAAATTCAGAA
GCAGAGCTTCTATTTTGGATGATGCATACCCATTACATAGTAATTGGCTGTGGGACATATGCATAGTCTT
GAGTGTGCTGATGATATTTTTCACTGGGCTCAGTTTGTTTCTACTTTGGACCCTAAACTGTTATGGTCAG
ATGTCATACTTACCTTCCATGAGCATGGATCTTTCCAAACATGACTTTGAGCAAAATAGTTCTAAATCTT
CTGAGTTCCAAGAAAATTATGATGTGAGCTGCGAAATATTCCTAGGAACTTTTGAAGAAACAATATTTAG
TCAACACCAAGAAAGTTGTATAGAGGATAGCTTCAACCCACTTCAGCCCTTAAGATTGGATTGCAGTCTT
AATTGGAAAACTTGA

Translation (354 aa):
MFLRTQMEQSQADIFALIKPHFGVMESSASYLPGFFMTFLLLQTTVLTQAMSLDIQINIQVPDTEGVLLE
CTSGSLIPPAEMTWRDSKGNIIPHSTTFDSQDRAGLLYLKSSILLKNRVQSPITCSIYNVTTNREKKRSV
VLPDILFKSEYMSLMSNKFSCPLTYLFIIIFLNCLKGMLDFCCLKGKPVYFRELINKIKEVLNIKMRACC
TLIWEFLLIVLYIAFLPFYLKFRSRASILDDAYPLHSNWLWDICIVLSVLMIFFTGLSLFLLWTLNCYGQ
MSYLPSMSMDLSKHDFEQNSSKSSEFQENYDVSCEIFLGTFEETIFSQHQESCIEDSFNPLQPLRLDCSL
NWKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH