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Report for CCDS18542.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18542.1 Public Mus musculus 4 Ipo13 23 108 98 CCDS HistoryNCBI Gene:230673Re-query CCDS DB by CCDS ID:18542.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18542.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036156.5 ENSMUSP00000035989.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036156.5Link to Ensembl Protein Viewer:ENSMUSP00000035989.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000036156Re-query CCDS DB by Protein ID:ENSMUSP00000035989
Original member Current member NCBI NM_146152.3 NP_666264.1 Accepted alive Link to Nucleotide Sequence:NM_146152.3Link to Protein Sequence:NP_666264.1Re-query CCDS DB by Nucleotide ID:NM_146152Re-query CCDS DB by Protein ID:NP_666264Link to BLAST:NP_666264.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666264.1 963 Q8K0C1-1 963 100% 0 0

Chromosomal Locations for CCDS 18542.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 117894561 117894657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117894744 117894925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117895212 117895301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117895420 117895478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117895563 117895629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117897768 117897820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117900649 117900745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117900918 117901055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117901558 117901638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117903121 117903264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117903398 117903532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117903694 117903720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117903798 117903979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117904377 117904524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117904610 117904730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117904905 117905071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117905181 117905322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117905443 117905583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117911773 117912509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117914288 117914371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2892 nt):
ATGGAGCGGCGGGAGGAGCAGCTGGGGGCTGCAGGGGCTGGAGCAGCACCAGCCTTGGACTTCACTGTGG
AGAACGTGGAGAAGGCGCTGCACCAGCTCTACTACGACCCCAATATTGACAACAAGAACCTGGCTCAGAA
GTGGCTGATGCAGGCCCAGGTCTCTCCACAGGCCTGGCACTTCAGCTGGCAGCTACTACAGCCAGACAAG
GTGCCCGAGATCCAGTACTTTGGGGCCAGTGCCCTGCACATCAAGATCTCTCGCTACTGGAGCGACATCC
CCACCGACCAGTATGAAAGCTTAAAGGCACAGCTCTTCACCCAGATCACCCGCTTTGCCAGCGGCTCCAA
AATTGTGCTGACTCGGCTGTGCGTGGCGCTGGCCTCACTAGCTCTCAGCATGATGCCTGACGCTTGGCCA
TGTGCTGTGGCAGATATGGTTCGGCTCTTCCAGGCTGAGGACTCGCCGGTGGATAGCCAGGGCCGTTGCC
TGGCCCTGCTAGAGTTGCTGACAGTACTGCCCGAGGAGTTTCAGACCAGCCGCTTGCCCCAGTACCGCAA
AGGTCTGGTGCGGACCAGCCTGGCTGTGGAGTGTGGGACTGTCTTCCCATTGCTGGAGCAACTGCTACAA
CAGCCCAGCTCTCCTAGCTGTGTGCGTCAGAAGGTGCTCAAGTGCTTCTCCAGTTGGGTGCAGCTGGAGG
TACCCCTGCAGGACTGTGAGGCGCTCATTCAGGCTGCCTTCGCCGCTCTGCAGGACTCAGAGCTCTTTGA
CAGCAGCGTGGAGGCCATTGTCAATGCCATCTCCCAACCTGATGCCCAAAGGTACGTGAACACACTCCTG
AAACTCATTCCTCTGGTGCTGGGACTGCAGGAACAACTGCGGCAGGCAGTGCAGAATGGGGACATGGAGA
CCTCCCATGGCATCTGCCGTATTGCTGTGGCCCTGGGCGAGAACCACTCTCGGGCCTTGCTAGACCAAGT
AGAGCACTGGCAGAGCTTCCTGGCACTCGTCAACATGATCATGTTCTGCACTGGCATCCCTGGCCACTAT
CCTGTCAACGAGACCACCAGCTCCCTCACTCTCACTTTCTGGTACACACTGCAGGATGACATTCTGTCCT
TTGAGGCAGAGAAGCAGGCTGTGTACCAGCAGGTGTACCGGCCAGTCTACTTCCAGCTGGTGGACGTGCT
TCTGCACAAGGCCCAGTTCCCTTCTGACGAGGAGTATGGATTCTGGTCCTCAGACGAAAAGGAGCAGTTC
CGTATCTACAGGGTGGACATCTCAGACACACTCATGTATGTCTATGAGATGCTGGGGGCTGAGCTGCTTA
GCAACCTCTATGACAAGCTGGGCCGTTTGCTCACCAGCTCAGAGGAGCCCTACTCCTGGCAGCACACAGA
AGCCCTGCTCTATGGCTTCCAGTCCATTGCAGAGACCATCGATGTCAACTACTCTGATGTGGTACCAGGG
CTCATTGGCCTCATCCCACGGATCAGCATCAGCAACGTGCAGTTGGCGGATACTGTCATGTTCACCATTG
GAGCTCTGTCTGAATGGCTGGCTGACCACCCCGTCATGATCAACAGCGTTCTGCCCCTTGTGCTGCATGC
CCTAGGCAATCCTGAGCTGTCTGTGTCATCTGTGTCGACCCTCAAAAAGATCTGCCGAGAGTGCAAGTAT
GACCTGCCGCCCTATGCTGCCAACATTGTAGCTGTCTCCCAGGATGTGCTGATGAAGCAGATTCACAAGA
CAAGCCAGTGCATGTGGCTGATGCAGGCCCTGGGCTTCCTGCTGTCAGCCCTGCAGGTGGAGGAGATCCT
GAAGAACCTGCACTCCCTCATCTCTCCCTACATCCAACAGCTGGAGAAGCTGGCAGAAGAGATACCTAAT
CCCTCTAACAAGCTGGCCATTGTCCACATCTTGGGGCTTCTTTCCAACCTCTTTACCACACTGGACGTCA
GTCATCATGAGGATGATCATGAAGGCCCTGAACTCCGGAAGTTGCCAGTGCCACAAGGACCCAACCCGGT
GGTGGTTGTGCTGCAGCAGGTCTTCCAGCTCATCCAGAAGGTGCTGAGCAAGTGGCTGAATGACGCCCAG
GTGGTTGAGGCGGTATGCGCCATCTTTGAGAAGTCTGTTAAGACACTGCTGGATGACTTTGCCCCCATGG
TGCCGCAGCTCTGTGAGATGCTGGGTCGGATGTACAGTACTGTTCCCCAGGCCTCTGCTCTTGACCTCAC
CCGGCAGCTGGTCCACATCTTTGCCCACGAGCCTGCCCACTTTCCCCCAATAGAGGCCCTCTTCCTGCTG
GTGACTTCCGTCACACTCAGTCTCTTCCAGCAAGGGCCCAGGGATCATCCTGATATTGTTGATTCATTTA
TGCAACTCCTGGCACAGGCTTTGAAGCGGAAGCCAGATTTGTTCCTGTGTGAGCGACTGGATGTCAAAGC
TGTGTTCCAGTGTGCCGTGCTGGCCCTCAAGTTCCCTGAGGCACCTACTGTCAAGGCCTCCTGTGGCTTC
TTTACTGAGCTGCTGCCTCGATGTGGGGAAATAGAGTCTGTGGGGAAAGTGGTACAGGAAGATGGCCGTA
TGCTGCTCATAGCAGTGCTGGAGGCCATCGGGGGCCAGGCCTCCCGTAGCCTCATGGACTGTTTTGCCGA
CATCCTGTTCGCCCTGAACAAACACTGCTTCAGCCTCCTGAGCATGTGGATCAAGGAGGCTCTGCAGCCA
CCTGGTTTTCCATCTGCCCGTCTCAGCCCTGAGCAGAAGGACACCTTTAGCCAGCAGATACTTCGTGAGC
GAGTAAACAAGAGACGGGTGAAGGAGATGGTGAAGGAATTTACACTGCTCTGCCGGGGGCTACATGGCAC
GGACTACACAGCTGACTACTGA

Translation (963 aa):
MERREEQLGAAGAGAAPALDFTVENVEKALHQLYYDPNIDNKNLAQKWLMQAQVSPQAWHFSWQLLQPDK
VPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWP
CAVADMVRLFQAEDSPVDSQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGTVFPLLEQLLQ
QPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQDSELFDSSVEAIVNAISQPDAQRYVNTLL
KLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHY
PVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQF
RIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPG
LIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGNPELSVSSVSTLKKICRECKY
DLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPN
PSNKLAIVHILGLLSNLFTTLDVSHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQ
VVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTVPQASALDLTRQLVHIFAHEPAHFPPIEALFLL
VTSVTLSLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGF
FTELLPRCGEIESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHCFSLLSMWIKEALQP
PGFPSARLSPEQKDTFSQQILRERVNKRRVKEMVKEFTLLCRGLHGTDYTADY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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