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Report for CCDS51388.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51388.1 Public Mus musculus 4 Phf13 23 108 98 CCDS HistoryNCBI Gene:230936Re-query CCDS DB by CCDS ID:51388.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51388.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055688.9 ENSMUSP00000062590.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055688.9Link to Ensembl Protein Viewer:ENSMUSP00000062590.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000055688Re-query CCDS DB by Protein ID:ENSMUSP00000062590
Original member Current member NCBI NM_172705.2 NP_766293.2 Accepted alive Link to Nucleotide Sequence:NM_172705.2Link to Protein Sequence:NP_766293.2Re-query CCDS DB by Nucleotide ID:NM_172705Re-query CCDS DB by Protein ID:NP_766293Link to BLAST:NP_766293.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766293.2 296 Q8K2W6 296 100% 0 0

Chromosomal Locations for CCDS 51388.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 151991553 151991779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151992070 151992592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151993990 151994091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151995826 151995864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (891 nt):
ATGGACTCCGACTCCTGCGCCGCCGCCTTCCACCCCGAGGAGTACTCCCCCACTTGTAAGAGGCGCCGGA
CTGTGGAAGACTTCAACAAATTCTGCACCTTCGTCTTGGCATATGCGGGCTACATCCCCTACCCAAAGGA
GGAGCTCCCCCTGAGGAGCAGTCCCAGCCCCGCCAACAGCACTGCCGGGACCATTGACAGCGACGGCTGG
GACACTGGTTTCTCTGACATCACGCCTTCAGTGCCCGACCGATGCTTCAGCCACCTGCAGCCTTCCCTCT
TGCAGAGAGCTAAGCCCAGTAACTACCTTCTGGACAGGAAGACAACTGACAAGCTGAAGAAGAAGAAGAG
GAGGAAGCGCAGGGACAGCGACATACCTGTGAAGGAGGGATTCAGGGAGAGCCTGCTGAAGCTGGAAGCT
GCAGACCCATATGTGGAGACTCCCTCAAGCCCCACCATGCAGGATATTCCCCAGGCGTCTGCTGACCCCT
GCTCAGGCTGGGACTCTGACACACCCTCAAGTGGCTCTTGTGCTACTGTGTCACCTGATCAGGTCACAGA
AATAAAAACTGAAGGAAAACGGACTATTGTCCGCCAGGGAAAGCAGGTGGTGTTCCGAGACGAAGACAGC
ACTGGCAATGATGAAGACATCATGGTGGACTCAGATGATGATTCCTGGGACCTCGTCACCTGTTTCTGCA
TGAAGCCCTTTGCCGGCCGCCCCATGATCGAGTGTAACGAGTGCCACACCTGGATTCACCTGTCCTGTGC
AAAGATCCGCAAGTCCAATGTCCCGGAAGTTTTTGTCTGCCAAAAGTGCCGGGACTCCAAGTTTGATATC
CGTCGCTCCAACCGGTCCCGAATGGGCTCCCGGAAGCTGTTTCTGGACTGA

Translation (296 aa):
MDSDSCAAAFHPEEYSPTCKRRRTVEDFNKFCTFVLAYAGYIPYPKEELPLRSSPSPANSTAGTIDSDGW
DTGFSDITPSVPDRCFSHLQPSLLQRAKPSNYLLDRKTTDKLKKKKRRKRRDSDIPVKEGFRESLLKLEA
ADPYVETPSSPTMQDIPQASADPCSGWDSDTPSSGSCATVSPDQVTEIKTEGKRTIVRQGKQVVFRDEDS
TGNDEDIMVDSDDDSWDLVTCFCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDSKFDI
RRSNRSRMGSRKLFLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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