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Report for CCDS19133.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19133.1 Public Mus musculus 5 Galnt11 23 108 98 CCDS HistoryNCBI Gene:231050Re-query CCDS DB by CCDS ID:19133.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19133.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045737.13 ENSMUSP00000036240.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045737.13Link to Ensembl Protein Viewer:ENSMUSP00000036240.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000045737Re-query CCDS DB by Protein ID:ENSMUSP00000036240
Original member Current member EBI ENSMUST00000114950.1 ENSMUSP00000110600.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114950.1Link to Ensembl Protein Viewer:ENSMUSP00000110600.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114950Re-query CCDS DB by Protein ID:ENSMUSP00000110600
Original member Current member EBI ENSMUST00000114952.7 ENSMUSP00000110602.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114952.7Link to Ensembl Protein Viewer:ENSMUSP00000110602.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114952Re-query CCDS DB by Protein ID:ENSMUSP00000110602
Original member Current member NCBI NM_001359890.1 NP_001346819.1 Accepted alive Link to Nucleotide Sequence:NM_001359890.1Link to Protein Sequence:NP_001346819.1Re-query CCDS DB by Nucleotide ID:NM_001359890Re-query CCDS DB by Protein ID:NP_001346819Link to BLAST:NP_001346819.1
Original member Current member NCBI NM_144908.4 NP_659157.1 Accepted alive Link to Nucleotide Sequence:NM_144908.4Link to Protein Sequence:NP_659157.1Re-query CCDS DB by Nucleotide ID:NM_144908Re-query CCDS DB by Protein ID:NP_659157Link to BLAST:NP_659157.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346819.1 608 Q921L8 608 100% 0 0
NP_659157.1 608 Q921L8 608 100% 0 0

Chromosomal Locations for CCDS 19133.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 25247492 25247786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 25248836 25248959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 25250087 25250253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 25252024 25252149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 25254907 25255156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 25257393 25257510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 25258812 25258964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 25261935 25262153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 25263380 25263484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 25264962 25265099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 25265250 25265381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1827 nt):
ATGGGAAGCATCACAGTTCGATATTTTTGTTATGGGTGCCTTTTTACATCTGCTACCTGGACAGTTCTGC
TTTTCATTTATTTTAACTTCAGTGAAGTGACTCAGCCCCTTAGGAATGTGCCCATCAAGGGGTCTGGGCC
CCACGGGCCATTTCCCAAAAAATTCTACCCACGTTTCACTCGAGGTCCAGGTCGGGTATTAGATCCACAG
TTCAAAGCAAACAGAATCGACCGTTTGATGAATAATCACATTGAAGATCCAGATAAAGGCCTCTCAAAAT
CTTCCTCTGAACTAGGTATGATTTTCAATGAACGTGATCAGGAATTGAGAGACCTGGGCTACCAGAAGCA
CGCCTTTAATATGCTCATTAGTAACCGCTTGGGATACCACAGAGACGTGCCGGACACCAGGAATGCAGAG
TGTAGGAGGAAGTCCTACCCGACTGACCTGCCAACTGCTAGCATTGTCATCTGTTTCTACAATGAAGCCT
TTTCTGCCTTACTGCGGACTGTGCACAGTGTTGTGGACCGCACACCGGCCCACCTTCTTCATGAGATCAT
CCTTGTGGATGACAGCAGTGACTTTGATGATTTAAAAGGAGAACTGGATGAGTACATCCAAAGATACCTG
CCTGCAAAAGTCAAGGTCATAAGAAATATGAAGCGCGAGGGATTGATCCGAGGACGAATGATCGGAGCAG
CCCACGCTACAGGAGAAGTCCTGGTGTTCCTGGACAGCCACTGTGAAGTGAATGTGATGTGGTTACAGCC
CCTGCTGGCCATTATCCTTGAGGACCCACACACAGTGGTGTGCCCCGTGATTGACATCATCAGTGCAGAC
ACACTCGCTTACAGCTCATCCCCAGTAGTTCGGGGAGGTTTCAACTGGGGGCTGCACTTCAAGTGGGATC
TAGTTCCCGTATCTGAGCTGGGAGGCCCTGACGGCGCCACGGCCCCAATAAGGTCACCTACAATGGCTGG
AGGCTTGTTTGCCATGAACAGACAGTATTTCAATGATCTTGGACAGTATGACAGTGGCATGGATATCTGG
GGAGGAGAAAATCTGGAAATCTCATTTCGGATCTGGATGTGTGGCGGCAAGCTCTTCATCCTCCCTTGCT
CAAGAGTAGGACACATTTTCCGAAAAAGGCGACCGTACGGATCTCCGGAAGGCCAGGACACCATGACACA
CAACTCCCTGAGACTGGCACATGTCTGGCTGGATGAGTACAAGGAGCAATATTTTTCCTTAAGACCTGAT
TTGAAGAACAAAAGCTTCGGGAATATCAGTGAGCGTGTTGAATTGAGGAAGAAACTGGGCTGTCAGTCAT
TCAAGTGGTATTTGGATAATATTTACCCTGAGATGCAGATACCTGGCCCGAATGCCAAACCTCAGCAGCC
CGTTCTCATCAACAGAGGACCCAAGCGCCCCAGAGTCCTGCAGCGTGGAAGGCTCTACCACTTGCAGACC
AACAAATGCCTGGTGGCCCAGGGCCGCTCCAGCCAGAAAGGAGGCCTAGTGCTGCTTAAGACCTGTGACT
ACGGAGACCCAACTCAGGTCTGGATTTATAATGAAGACCATGAATTGATTTTAAACAACCTCCTTTGCCT
TGACATGTCAGAAACTCGCTCATCGGATCCACCCCGACTCATGAAGTGCCATGGGTCAGGAGGATCCCAG
CAGTGGACCTTTGGGAAGAACAACCGGCTGTACCAAGTGTCCGTTGGGCAGTGCCTGAGAGTTATGGACC
TGATGGATCAGAAGGGCTACGTTGGCATGGCGATCTGCGATGGCTCCTCCTCTCAACAGTGGCGTCTAGA
AGGTTAA

Translation (608 aa):
MGSITVRYFCYGCLFTSATWTVLLFIYFNFSEVTQPLRNVPIKGSGPHGPFPKKFYPRFTRGPGRVLDPQ
FKANRIDRLMNNHIEDPDKGLSKSSSELGMIFNERDQELRDLGYQKHAFNMLISNRLGYHRDVPDTRNAE
CRRKSYPTDLPTASIVICFYNEAFSALLRTVHSVVDRTPAHLLHEIILVDDSSDFDDLKGELDEYIQRYL
PAKVKVIRNMKREGLIRGRMIGAAHATGEVLVFLDSHCEVNVMWLQPLLAIILEDPHTVVCPVIDIISAD
TLAYSSSPVVRGGFNWGLHFKWDLVPVSELGGPDGATAPIRSPTMAGGLFAMNRQYFNDLGQYDSGMDIW
GGENLEISFRIWMCGGKLFILPCSRVGHIFRKRRPYGSPEGQDTMTHNSLRLAHVWLDEYKEQYFSLRPD
LKNKSFGNISERVELRKKLGCQSFKWYLDNIYPEMQIPGPNAKPQQPVLINRGPKRPRVLQRGRLYHLQT
NKCLVAQGRSSQKGGLVLLKTCDYGDPTQVWIYNEDHELILNNLLCLDMSETRSSDPPRLMKCHGSGGSQ
QWTFGKNNRLYQVSVGQCLRVMDLMDQKGYVGMAICDGSSSQQWRLEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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