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Report for CCDS19559.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19559.1 Public Mus musculus 5 Alkbh2 23 108 98 CCDS HistoryNCBI Gene:231642Re-query CCDS DB by CCDS ID:19559.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19559.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053657.12 ENSMUSP00000056043.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053657.12Link to Ensembl Protein Viewer:ENSMUSP00000056043.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000053657Re-query CCDS DB by Protein ID:ENSMUSP00000056043
Original member Current member EBI ENSMUST00000112279.1 ENSMUSP00000107898.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112279.1Link to Ensembl Protein Viewer:ENSMUSP00000107898.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112279Re-query CCDS DB by Protein ID:ENSMUSP00000107898
Original member NCBI NM_001359940.1 NP_001346869.1 Updated not alive Link to Nucleotide Sequence:NM_001359940.1Link to Protein Sequence:NP_001346869.1Re-query CCDS DB by Nucleotide ID:NM_001359940Re-query CCDS DB by Protein ID:NP_001346869
Current member NCBI NM_001359940.2 NP_001346869.1 Accepted alive Link to Nucleotide Sequence:NM_001359940.2Link to Protein Sequence:NP_001346869.1Re-query CCDS DB by Nucleotide ID:NM_001359940Re-query CCDS DB by Protein ID:NP_001346869Link to BLAST:NP_001346869.1
Original member NCBI NM_001359941.1 NP_001346870.1 Updated not alive Link to Nucleotide Sequence:NM_001359941.1Link to Protein Sequence:NP_001346870.1Re-query CCDS DB by Nucleotide ID:NM_001359941Re-query CCDS DB by Protein ID:NP_001346870
Current member NCBI NM_001359941.2 NP_001346870.1 Accepted alive Link to Nucleotide Sequence:NM_001359941.2Link to Protein Sequence:NP_001346870.1Re-query CCDS DB by Nucleotide ID:NM_001359941Re-query CCDS DB by Protein ID:NP_001346870Link to BLAST:NP_001346870.1
Original member NCBI NM_175016.3 NP_778181.2 Updated not alive Link to Nucleotide Sequence:NM_175016.3Link to Protein Sequence:NP_778181.2Re-query CCDS DB by Nucleotide ID:NM_175016Re-query CCDS DB by Protein ID:NP_778181
Current member NCBI NM_175016.4 NP_778181.2 Accepted alive Link to Nucleotide Sequence:NM_175016.4Link to Protein Sequence:NP_778181.2Re-query CCDS DB by Nucleotide ID:NM_175016Re-query CCDS DB by Protein ID:NP_778181Link to BLAST:NP_778181.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346869.1 239 Q6P6J4 239 100% 0 0
NP_001346870.1 239 Q6P6J4 239 100% 0 0
NP_778181.2 239 Q6P6J4 239 100% 0 0

Chromosomal Locations for CCDS 19559.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 114123948 114124254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114125532 114125730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114127526 114127739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (720 nt):
ATGGACAAGTTCCTGGTGAGGCCAGACCTCCGCGACCTCCAAGGGGGAGGGGAGGAGCCCGCCCCGACGG
GAGGAGCCTCGGGCGACCTGAAGAGCCCGGACTGGCGACACCTTCGCGCGGAAGGTCTGAGCTGTGATTA
CACCGTCCTATTCGGCAAAGCCGAGGCAGACAAGATTTTCCGAGAGTTGGAGCAAGAAGTGGAGTATTTT
ACTGGTGCACTGGCCAAGGTCCAGGTGTTCGGAAAGTGGCACAGTGTTCCCAGGAAGCAGGCGACCTATG
GCGATGCTGGCCTCACGTACACGTTTTCTGGTCTTACCCTGACACCAAAGCCCTGGGTTCCTGTTCTAGA
GCGTGTTCGAGATCGAGTCTGCGAGGTGACAGGACAGACCTTCAACTTTGTACTCGTGAACAGGTACAAA
GATGGTTGCGACCACATCGGCGAGCACAGAGATGACGAGCGAGAACTGGCTCCGGGGAGCCCCATCGCGT
CTGTCTCCTTTGGCGCTTGCAGAGACTTCATTTTCCGGCACAAAGACTCTCGAGGGAAGAGGCCCCGGAG
GACAGTGGAGGTGGTCAGGCTGCAGCTGGCACACGGAAGCCTGCTGATGATGAACCCCCCAACCAACACC
CACTGGTACCACAGTCTCCCCATCCGCAAGAGGGTCCTGGCTCCGCGGGTCAACTTGACTTTTCGGAAAA
TTTTACCTACTAAGAAATAA

Translation (239 aa):
MDKFLVRPDLRDLQGGGEEPAPTGGASGDLKSPDWRHLRAEGLSCDYTVLFGKAEADKIFRELEQEVEYF
TGALAKVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLTPKPWVPVLERVRDRVCEVTGQTFNFVLVNRYK
DGCDHIGEHRDDERELAPGSPIASVSFGACRDFIFRHKDSRGKRPRRTVEVVRLQLAHGSLLMMNPPTNT
HWYHSLPIRKRVLAPRVNLTFRKILPTKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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