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Report for CCDS33749.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33749.1 Public Homo sapiens 3 KLHL18 24 110 108 CCDS HistoryNCBI Gene:23276Re-query CCDS DB by CCDS ID:33749.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33749.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000232766.6 ENSP00000232766.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000232766.6Link to Ensembl Protein Viewer:ENSP00000232766.5Re-query CCDS DB by Nucleotide ID:ENST00000232766Re-query CCDS DB by Protein ID:ENSP00000232766
Original member Current member NCBI NM_025010.5 NP_079286.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025010.5Link to Protein Sequence:NP_079286.2Re-query CCDS DB by Nucleotide ID:NM_025010Re-query CCDS DB by Protein ID:NP_079286Link to BLAST:NP_079286.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079286.2 574 O94889-1 574 100% 0 0

Chromosomal Locations for CCDS 33749.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 47282966 47283094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 47319653 47319783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 47322568 47322708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 47329951 47330149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 47333157 47333317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 47334683 47334819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 47336535 47336757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 47340572 47340676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 47342719 47342830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 47343555 47343941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1725 nt):
ATGGTGGAGGACGGCGCGGAGGAGCTGGAGGATCTGGTGCACTTCTCCGTGTCTGAGTTGCCTAGTCGCG
GCTACGGCGTCATGGAGGAGATCCGGCGGCAGGGCAAGCTGTGCGACGTGACCCTCAAGATTGGGGACCA
CAAATTCAGTGCCCACCGGATTGTCTTAGCAGCCTCGATCCCGTATTTCCATGCTATGTTTACAAATGAC
ATGATGGAGTGCAAGCAGGATGAGATTGTAATGCAAGGAATGGACCCAAGTGCCCTGGAGGCTCTGATCA
ACTTTGCCTACAACGGCAACCTTGCCATTGACCAGCAAAATGTCCAGTCATTGCTGATGGGGGCGAGCTT
CCTGCAGCTGCAGAGCATCAAAGACGCCTGCTGCACATTCCTTCGAGAACGGCTTCACCCAAAAAACTGC
CTGGGTGTGCGCCAGTTTGCTGAGACAATGATGTGTGCTGTGCTGTACGACGCTGCCAACAGCTTCATCC
ACCAGCACTTTGTGGAGGTGTCCATGTCAGAAGAGTTCCTGGCCCTGCCCTTGGAAGACGTGCTTGAGCT
GGTGTCTCGGGATGAGCTGAATGTCAAATCTGAGGAGCAGGTCTTTGAAGCTGCATTGGCCTGGGTCAGA
TACGACCGGGAGCAGAGGGGTCCCTACCTGCCTGAGCTGCTGTCCAATATCCGCCTGCCCCTCTGTCGGC
CCCAGTTCCTTTCAGACAGAGTACAGCAGGATGACCTGGTGCGTTGCTGCCACAAATGCAGGGACCTGGT
AGACGAAGCAAAGGACTACCACCTCATGCCAGAGCGCCGGCCCCACCTGCCAGCTTTCAGAACCCGGCCA
CGCTGCTGCACATCCATCGCTGGACTTATCTACGCTGTAGGGGGCCTCAACTCAGCAGGTGATTCCCTGA
ATGTGGTGGAAGTGTTCGACCCCATTGCCAATTGCTGGGAGAGATGCCGTCCCATGACAACAGCCCGCAG
CCGCGTTGGCGTGGCTGTGGTGAACGGGCTTCTCTATGCCATCGGAGGATATGACGGCCAGCTACGGCTG
AGCACTGTGGAGGCCTACAACCCGGAGACAGACACATGGACCAGAGTGGGGAGCATGAATAGCAAGAGAA
GTGCCATGGGGACAGTCGTGCTGGATGGGCAGATCTACGTCTGTGGGGGCTACGATGGCAACTCTTCCCT
CAGCTCCGTGGAGACCTACTCACCTGAGACGGACAAATGGACAGTGGTGACCTCGATGAGCTCGAATCGC
AGTGCTGCTGGGGTTACAGTCTTTGAGGGCAGGATATATGTGTCAGGCGGCCATGATGGTTTGCAGATCT
TCAGCAGTGTGGAACACTACAACCACCACACAGCCACCTGGCACCCTGCAGCTGGCATGCTCAACAAGCG
CTGCCGGCACGGAGCCGCCTCCCTGGGGAGCAAGATGTTTGTCTGCGGGGGCTACGATGGCTCTGGCTTC
CTCAGCATTGCCGAGATGTACAGCTCTGTGGCAGACCAGTGGTGCCTGATTGTCCCCATGCACACGCGCA
GGAGCCGGGTCTCCCTGGTGGCCAGCTGTGGGCGCCTCTACGCTGTTGGGGGCTACGACGGACAGTCAAA
CCTAAGCTCAGTGGAGATGTATGACCCAGAGACAGACTGCTGGACATTCATGGCCCCCATGGCGTGCCAT
GAGGGAGGGGTCGGTGTGGGCTGCATCCCTCTCCTCACCATCTAA

Translation (574 aa):
MVEDGAEELEDLVHFSVSELPSRGYGVMEEIRRQGKLCDVTLKIGDHKFSAHRIVLAASIPYFHAMFTND
MMECKQDEIVMQGMDPSALEALINFAYNGNLAIDQQNVQSLLMGASFLQLQSIKDACCTFLRERLHPKNC
LGVRQFAETMMCAVLYDAANSFIHQHFVEVSMSEEFLALPLEDVLELVSRDELNVKSEEQVFEAALAWVR
YDREQRGPYLPELLSNIRLPLCRPQFLSDRVQQDDLVRCCHKCRDLVDEAKDYHLMPERRPHLPAFRTRP
RCCTSIAGLIYAVGGLNSAGDSLNVVEVFDPIANCWERCRPMTTARSRVGVAVVNGLLYAIGGYDGQLRL
STVEAYNPETDTWTRVGSMNSKRSAMGTVVLDGQIYVCGGYDGNSSLSSVETYSPETDKWTVVTSMSSNR
SAAGVTVFEGRIYVSGGHDGLQIFSSVEHYNHHTATWHPAAGMLNKRCRHGAASLGSKMFVCGGYDGSGF
LSIAEMYSSVADQWCLIVPMHTRRSRVSLVASCGRLYAVGGYDGQSNLSSVEMYDPETDCWTFMAPMACH
EGGVGVGCIPLLTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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