NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52021.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52021.1 Public Mus musculus 7 Zscan18 23 108 98 CCDS HistoryNCBI Gene:232875Re-query CCDS DB by CCDS ID:52021.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52021.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046245.5 ENSMUSP00000047088.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046245.5Link to Ensembl Protein Viewer:ENSMUSP00000047088.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000046245Re-query CCDS DB by Protein ID:ENSMUSP00000047088
Original member Current member EBI ENSMUST00000210650.1 ENSMUSP00000147550.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210650.1Link to Ensembl Protein Viewer:ENSMUSP00000147550.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000210650Re-query CCDS DB by Protein ID:ENSMUSP00000147550
Original member Current member EBI ENSMUST00000211392.1 ENSMUSP00000148239.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211392.1Link to Ensembl Protein Viewer:ENSMUSP00000148239.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000211392Re-query CCDS DB by Protein ID:ENSMUSP00000148239
Original member NCBI NM_001017955.2 NP_001017955.2 Updated not alive Link to Nucleotide Sequence:NM_001017955.2Link to Protein Sequence:NP_001017955.2Re-query CCDS DB by Nucleotide ID:NM_001017955Re-query CCDS DB by Protein ID:NP_001017955
Current member NCBI NM_001017955.3 NP_001017955.2 Accepted alive Link to Nucleotide Sequence:NM_001017955.3Link to Protein Sequence:NP_001017955.2Re-query CCDS DB by Nucleotide ID:NM_001017955Re-query CCDS DB by Protein ID:NP_001017955Link to BLAST:NP_001017955.2

Chromosomal Locations for CCDS 52021.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 12769201 12769745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12770804 12770893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12771664 12771742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12772009 12772115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12773441 12773590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12774113 12775571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2430 nt):
ATGCTGCCTTTGGAGAGGGTGTTAGCCTCTCCTAGAAGCTCTCCACCCCAACCAGAACCATCTACTCTGC
GGTCAAAAGATACAGTACAGCAGGAAGAACCTGGCCAGCAGGAGGAACCCATCCAGCAGGAAGGACTCAT
TAAGCAACAAGAACCTAGCCAGCAGGAGGAATGCAGGAGGCAGGATGAACTCATCCGGAAAGAAGAACCC
ATCCAGCTGCTGGAAACTAGTCAGAGGGAAGAACTCAGTGAGCAGCAAGAACCTAGTCAACAGGATGAGC
CCAGTCAAGAGGAAGAGTCTGTCCAACTGCAAGAACCCAGCCAGTGGGGAGAACCTGGCCAAAAGGATGT
ACCCATGCAGCAGGAAGAACCTATGCAGCAGGATGAGCCCAGCCAGTGGGAAGAACCCATGCAGCAAGAT
GAACCCATGCAGCAGGAAGAACTCATGCAGCAGACAGAGCCCATTGAACAGGATAAGCCCATCCAACAGG
AAGAACTCACCCAGCAGGAGGAGCCCATTCAGCAGGATGCTTCCATCCAACGTGAACTCATTCATCAGGT
GAGGCCCATCCAGAAGGAATTGATTCTGCGGGAGGAGTTCATTCAGCAGGATAAGTGCACCCAAAAAGAA
GAATTTATTCAGCAAGAGAAGCCAATTCAGCAGGTAAGGTTCAGTGAACAGGAGGAACCCAGCCAGCAGG
AGGAATCCAGCCAGCAGGAGGAATCCAGCCAGCAGGAGGAGCTCAGTCAACAGAAGGAGTCTAGCCAGAA
GGCTCAACCATACCAACAGGAGGAACCCAGCCAACAGCAAGAGCCTAGCCAGAAGGATCAACCCAGCCAG
CAGGAGGAACCCAGCCAACAGCAAGAGCCTAGTCAGAAAGATCAACCCAGCCAGCAGGAGGAGCTCAGCC
AACAGGAAGAGCCTAGCCAGAAGGATCAATGCAACCAACAGGAGGAACCCAGCCAACAACAAGAGCCTAG
CCAGAAGGATCAACCCAACCAACAGGCAGAACTCAGCCAACAGGAAGAGCCTAGCCAGAAGGATCAATGC
AACCAACAGGAAGAGCCTAGCCAGAAGGATCAATGCAAACAACAGGAAGAGCCTAGCCAGAAGGATCAAC
CCAACCAACAGGAAGAGCCTAGCCAGCTGAAGGAAACAGAAACCATCACTGAGAGATCTGCTGCTGACCT
CGAGTTTTCCCGCCTCCGCTTCCGGGAGTTTGTCTACCAGGAGGCAGCTGGGCCTCACCAGACTTTGGCC
AGGCTTCATGAGCTATGCCGCCAGTGGCTGAGGCCCGAGGCCTGCTCCAAAGAGCAGATCCTGGAGCTGC
TCGTTCTGGAGCAGTTCCTGGGCATCTTGCCAGACAGGGTCCGTCCCTGGGTGGTAGCCCAGTATCCCGA
GAATTGCAAGAAAGCTGCCTCCCTGGTGGAGGGTATCTCTGACATCCTGGAGGAGCCAGGAATGATGTTG
TGTTCCCCGGGTGGGTCATCATCGTCATTCAGCGAGGGAGACTATGAGAGGTGTCCTGAGCCCCTGCTGC
TACCATGTGGGTTGCTAAGTCCTAACAGAAACTTAAGACCTAGGGACATCCTGGTACGCCGTGATACTTC
TCCCCTTCTACCAGCTTGGCCTACTCTGGAATCTGTGCATTTGGATCAAGAGCGTACAGAGGGAGAAAAG
AGTAAAGAGGCCAACGCTGCCACAGCTGAGCTGAAGGGGCCTCTACAGTCGGAATGGGACCACCTGGATC
CCACAGAGGATAACCTGACGAGTTACAGCAAGCTGCTCCTGTGGGGGTGTCAGTTTTCCCAGGCTGGTCC
AACTTCCATGCTGGAGACAGAGGAACCTTGTGCGGTGGAAAACCTGCCAGGGGGCAGCCTCCCAGACAGC
ACCAGGCAGCAGGAAAGCAAAGGAAATGTGTGTGAGGAAGTCTCCCTGGGGGAGACACTGATGGAGAGTC
TTTCAGGGGATGTTCCTGTTAGTGCTTCAATAGATACTGCCCTGGAGGAGGAACAGCAACCTCAGAAGGC
TCTGGATGCCGAGGGTGAAGATTCAAGCCCTGCCAGTCCCCAGAGGCAATCAGTCATCCAGCAGTCAGCC
CAGGACAAGGATAGGCCACATCAAGGCACTGGGACAAAGAGGCCCCATCCAGATGACGAGGATGAAATGG
CCCCTGAGTGTCTTTCCAGCACCAGCAGCTACCAGCTGCCATTTGATGCAGGGAAAGTGCTTCATGTGGA
TGGTCATGATTCTGGGCAGGACTCAGGAACTTCTGCTGGGGGATGCTCTTCAGCTGATAAGTCTGATGCA
TCTCAAGGGAAGCCCTACACATGCAGTGAATGTGGGGAGGCCTTTGCATGGATCTCCAACCTTATGGAGC
ATCACAAGAGTCATGGCAGTGAGACATGCTATGTGAGCCAGGGCTGCTAG

Translation (809 aa):
MLPLERVLASPRSSPPQPEPSTLRSKDTVQQEEPGQQEEPIQQEGLIKQQEPSQQEECRRQDELIRKEEP
IQLLETSQREELSEQQEPSQQDEPSQEEESVQLQEPSQWGEPGQKDVPMQQEEPMQQDEPSQWEEPMQQD
EPMQQEELMQQTEPIEQDKPIQQEELTQQEEPIQQDASIQRELIHQVRPIQKELILREEFIQQDKCTQKE
EFIQQEKPIQQVRFSEQEEPSQQEESSQQEESSQQEELSQQKESSQKAQPYQQEEPSQQQEPSQKDQPSQ
QEEPSQQQEPSQKDQPSQQEELSQQEEPSQKDQCNQQEEPSQQQEPSQKDQPNQQAELSQQEEPSQKDQC
NQQEEPSQKDQCKQQEEPSQKDQPNQQEEPSQLKETETITERSAADLEFSRLRFREFVYQEAAGPHQTLA
RLHELCRQWLRPEACSKEQILELLVLEQFLGILPDRVRPWVVAQYPENCKKAASLVEGISDILEEPGMML
CSPGGSSSSFSEGDYERCPEPLLLPCGLLSPNRNLRPRDILVRRDTSPLLPAWPTLESVHLDQERTEGEK
SKEANAATAELKGPLQSEWDHLDPTEDNLTSYSKLLLWGCQFSQAGPTSMLETEEPCAVENLPGGSLPDS
TRQQESKGNVCEEVSLGETLMESLSGDVPVSASIDTALEEEQQPQKALDAEGEDSSPASPQRQSVIQQSA
QDKDRPHQGTGTKRPHPDDEDEMAPECLSSTSSYQLPFDAGKVLHVDGHDSGQDSGTSAGGCSSADKSDA
SQGKPYTCSECGEAFAWISNLMEHHKSHGSETCYVSQGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH