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Report for CCDS52208.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52208.1 Public Mus musculus 7 Gm4884 23 108 98 CCDS HistoryNCBI Gene:233164Re-query CCDS DB by CCDS ID:52208.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52208.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164422.1 ENSMUSP00000133059.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164422.1Link to Ensembl Protein Viewer:ENSMUSP00000133059.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164422Re-query CCDS DB by Protein ID:ENSMUSP00000133059
Original member Current member NCBI NM_183166.2 NP_898989.2 Accepted alive Link to Nucleotide Sequence:NM_183166.2Link to Protein Sequence:NP_898989.2Re-query CCDS DB by Nucleotide ID:NM_183166Re-query CCDS DB by Protein ID:NP_898989Link to BLAST:NP_898989.2

Chromosomal Locations for CCDS 52208.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 41032877 41032883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 41040689 41040871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 41042799 41044693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2085 nt):
ATGTCAGAAAATCTCCAAAGTTCACCTTTCTTTGGGACAGAAAGCACTCTGCACCCTTCTCTGCCTCTGC
TGAGCAACTCCAAACAGCCTGCAGGAACGGTGTGCAACTTTTCCAGAGTTTCCACCCCAGATGTGAGTTC
AGCATGGCTTCTACCATCAGCATCGAGCACTTCTCTCCAGCCGCTCATGGTGGTTCAAATGGAGACATCC
CTGGGATTGCCACCTTCAGGCCAGACATACTGTCAGCTGCAGAGTCCAGAACTCTGCAACACCTGTGTCC
AGGTTTCCCAGATAAGGCCACCAGCTGTCAATGGGGACAAGGCATTAACAGCCCCCATCCACAGTCCTTC
ACAGTTCCTGGCCTTGCCTCCAGCTCCAAGCCTGGAACAACCAGAGAACAAAACCATGCCTGAGATAAAA
GAGGGCACAAAAGAAAACCAAGACACACCAGTCCTGACTTTGGAACACCCTGACTTGCAGCAGCCTCTGC
ACTGCACTGACACTGAGAGCCTCAGGCAGAAGCCTGATTCTGATAATGCCCATTTGGGATGCATCTGCAT
GGGTCCGAAAGAGCTTGTGGGGCTAGAGAATGAGATTGGATCTAGCTTCGACTTTAAAGACATCACTAGG
TTTGGGGCAGACATTCAACTTCCCCAACTCCTAAACACCCTCACAGACATAGACCAAGATCAGTCCTGTG
AAAACTGGAGAGTCACCAGTGGCCTCTTTGACCAGGTGAGGGAGAACAAACATAAATCCTTTGAGTTGCT
TGAGGGGGCTCCTCAGGCCAAATTCCAGCACTGGGACCTGGTGGAGGGAGAAGGGGCTGTGGGTGTTGCT
GGGGCCAGTGACAGGGCTATTGACAACATGGCAAAGCACCCAGAGGGCAAAGCTCCCAAAGGGCCCCCAA
GCAAGAACAGAAGAGCTAGAAAACAGGAGCAAGAAAGACCAAGTGGACCAGAGAACAAGTCCAAGAAAAC
ACAGGAGCTTAAGCAGTCAAGGAACAGAGTCAAAGCAGAAAAGGAGCCCTCCATCCCCAAGACCAAGAGG
AAGAGGAACCCACCTGAGCTCAGTCAAAACAGCTTCAAGAAGCCTCGAACCAACCTAGCAATGCACATGC
TGGAGTCCGTGCAGGTCTTCCACCCACTGGGAAAAAAGAGTGAGAAGAAAACTGGCATCTCCTCTTTCAG
AGGTCTGCGAACCTTCACCAGCAACAAAGATTCAGGTCCAGGCTCAGTTACTACAACAGTGTTAAACATG
CCATGTGAGAGCCAGGGTCCTCCCAAAAGCCCAGGGAAGGTTCAGAGTGCAGAGAGCAGTGTTGGCAAAG
ATTGTCTATCTCCATCCCAGTATGAGCTGCCCCCAGCTGGGAAGGTCAAGTTAGTTCCTCTGCCTTTTCC
AACTCTGGACAAGCCTCAATCCAGACCTGCTTCTAGAAAGCCCCTTTCCCTGGCTTTACGCAGGCCCACT
GCAGTTTACCCTGTGCAGCATCACTCTCACTCAGTGCAACCTACCACACTCAGGCCAGCCCAACCACCTC
CTGCGAGCTCATCTTTGATAGCCTCTGCCAAGCCAGCTCCTCCAATTTCCTCCAGTGCCACTGGACCTAA
TGTAACCAACCCCAACCAGTCTAGTGCTGTGCCCCAGTTGGCCACCTCGAGGCCTGTACCCTACAGAGCA
TCATCTCACACATCATTCCAGAGAGAGCTTGTTTCTGCTGCCAGGAACAAGGTACCATCACCTCCCAGGC
CTGTACCCTACAGAGCATCATCTAACACATCATTTCAGAGAGAGCTTGTTTCTGCTGCCAGGAACAAGGT
ACCATCACCTCCCAAACCTCAAACCCAATATCTGCTGCATGACTTCAGCCGCCAACCCATTCCATGGAAG
AAAGTCGACATTCTGGGACCAGTTGTCTCACAACCCATCACAAAAGAGCAGAGGCCAGAGAGGGAGGCCA
TGAAGAGGCGATCCCAACAAGAGCGTGAGAATGCTGTCAAGAACCCCTCTACTGGGAAACTGCAGATTTT
CCTTCAGAGGGAGAGGGATATGGAAATTTCTCAATATTATGGCTATGCAATGTAA

Translation (694 aa):
MSENLQSSPFFGTESTLHPSLPLLSNSKQPAGTVCNFSRVSTPDVSSAWLLPSASSTSLQPLMVVQMETS
LGLPPSGQTYCQLQSPELCNTCVQVSQIRPPAVNGDKALTAPIHSPSQFLALPPAPSLEQPENKTMPEIK
EGTKENQDTPVLTLEHPDLQQPLHCTDTESLRQKPDSDNAHLGCICMGPKELVGLENEIGSSFDFKDITR
FGADIQLPQLLNTLTDIDQDQSCENWRVTSGLFDQVRENKHKSFELLEGAPQAKFQHWDLVEGEGAVGVA
GASDRAIDNMAKHPEGKAPKGPPSKNRRARKQEQERPSGPENKSKKTQELKQSRNRVKAEKEPSIPKTKR
KRNPPELSQNSFKKPRTNLAMHMLESVQVFHPLGKKSEKKTGISSFRGLRTFTSNKDSGPGSVTTTVLNM
PCESQGPPKSPGKVQSAESSVGKDCLSPSQYELPPAGKVKLVPLPFPTLDKPQSRPASRKPLSLALRRPT
AVYPVQHHSHSVQPTTLRPAQPPPASSSLIASAKPAPPISSSATGPNVTNPNQSSAVPQLATSRPVPYRA
SSHTSFQRELVSAARNKVPSPPRPVPYRASSNTSFQRELVSAARNKVPSPPKPQTQYLLHDFSRQPIPWK
KVDILGPVVSQPITKEQRPEREAMKRRSQQERENAVKNPSTGKLQIFLQRERDMEISQYYGYAM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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