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Report for CCDS21849.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21849.1 Public Mus musculus 7 Hirip3 23 108 98 CCDS HistoryNCBI Gene:233876Re-query CCDS DB by CCDS ID:21849.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21849.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037248.9 ENSMUSP00000035535.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037248.9Link to Ensembl Protein Viewer:ENSMUSP00000035535.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000037248Re-query CCDS DB by Protein ID:ENSMUSP00000035535
Original member NCBI NM_172746.3 NP_766334.1 Updated not alive Link to Nucleotide Sequence:NM_172746.3Link to Protein Sequence:NP_766334.1Re-query CCDS DB by Nucleotide ID:NM_172746Re-query CCDS DB by Protein ID:NP_766334
Current member NCBI NM_172746.4 NP_766334.1 Accepted alive Link to Nucleotide Sequence:NM_172746.4Link to Protein Sequence:NP_766334.1Re-query CCDS DB by Nucleotide ID:NM_172746Re-query CCDS DB by Protein ID:NP_766334Link to BLAST:NP_766334.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766334.1 601 Q8BLH7 601 100% 0 0

Chromosomal Locations for CCDS 21849.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 126862452 126862516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126862600 126862720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126862818 126862926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126863169 126864250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126864320 126864485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126864563 126864661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126864734 126864897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1806 nt):
ATGGCGCCGGGAGATGAGATGCGAAAATTCACTCGCAGCTTCTTTCGAGCTTGCCCGGACCTCAGCTCGG
TTACGCACGCCATCGTGCGACAGAAATTTTTGATTCACGTGGGTCGGGATCATCTTGAACCTGAAGAGAA
GCAGGCGTTGAAGCGGCTGGTGGAGGAGGAGCTGCCGAAAATGCAGGCGGATGCTGGTACCAGGGAAGGA
AAGCCAGACTTTATCAAAGTGAAGAGGTCTCCTGCTCCCTGCAGTGACCCAAAGAAGAAAAGGTTCCGCT
TTAATTCAGAGTCAGAATCCAGCTCTTCACCATCCAGTCCAGATGGCTCAGGACCCTCAACAAAGAACAG
GACAACCAAGAAGACATGTCTAAGAAGAGCCTTAAAGAAAGCAGTTGAGAGCACAGATGAAGACCACCAA
ACAGACCTGGATGCAAAGATGGGATTGGAGGAGAGCAGTGAGGGGGAAGCAGAGGGCTCTGTTAGATCAG
GTAAGGTCACCGAGGAAGAGGAGGACATGAAACAAGAACAGAAGGGCCAGGTTAGAAAGCAAGCTGGGGC
CAAAGACAAGCAAGTACCACTCAAGGCAGACAGGAAGCAGGTTAGGGAAGAGAGTGGGAGCAGTGAGGAG
GAGGCTGTGCTGCAGAGAGCAAAGGTGGAGGGAAGCACAGGTGCTAACTGCCAGGAGGAGAGTGAAGAGA
GCGGAGAGGAGAGCCCAGCTAAGAAGAAAGAGCTTAGTGAGCCCAGATCCAGAAGTAACAGAGCAGAGAG
AACAGCCAGGGAGAGAAAGAGCTATAAGCAGAAAAGCAGGCCTGGGAGGCCAACTGGAGGCTTGCGAGAC
AGCGAGGCAGAGAAGGAAGGGGGCACAGTGGGCAGTGGGGACAGCAGTGAGGAGGGGGAGGCAGAGAAGG
AAGGAGGCACAGTGGGCAGTGGGGACAGCAGTGAGAAGGGGGAGGCAGAGAAGGAAGAGGGCACAGTGGG
TAGTGGGGACAGCAGTGAGGAGGGAGAAGAGCACTCGGTGAAGAGAAAGAGCAAGGTCAGGACCCAGACC
GAGAGTGGGAGGAGGCAGAACACAAGCAGCAGGGATGACAGTAACAGCACACAGGAGCAAGCAGCTGCTC
AAGGCACTACAAAGTCAGGCAGCCTAGGCAGCAGTAATGGTGACAGTGACACAGAGAGGGAAGTGAGTGA
CTCCCAGGCAGGACAAAACACCAAAGAGGAGAGGAAGAGCCGCTCTTCCAACAAGAGCTCCAAGAACGGC
CAGGCCCGAAGTTGTTCATCTTCATCAGATTCGAGTCCAGAACCCACAGGTCAGAAGGGCAAGGCCCGAA
GTTCCTCATCTTCATCAGATTCAGGTCCAGAACCCACAGGTCGGAAGGCTGCCTCTCGCTGTGGAGAGGA
CCACCCAGCTGTGGCTAGACTAAAGCGTTACATTCGAGCCTGTGGTGCCCACCGAAACTACAAGAAGCTG
CTGGGCTCCTGCAGCTCCCACAAGGCGCGCCTGAGTGTCCTCAGGGCTGAGCTGGAAGCACTGGGCATGA
AGGGGAACCCTTCCTTGGAGAAGTGTCGCGCTCTGAAGCTGCAGCGGGAAGAGGCAGCTGAAGTGGCTGC
CCTGGATGTTGCCAACATCATCAGCAGTACAGGCCGGCCACGAAGACGAAATGCCTGGAACCCTTCAGGG
GAAGGGACCTCCCCAGGAGAGACTTATCGCCGAACCCTGGACTCAGAAGAGGAGCAGCCGCGCCAAGCAC
CTCCAGACTGGTCCCATATGCGTGATATCATCAGCAGTGACGGTGACAGCAGCTGA

Translation (601 aa):
MAPGDEMRKFTRSFFRACPDLSSVTHAIVRQKFLIHVGRDHLEPEEKQALKRLVEEELPKMQADAGTREG
KPDFIKVKRSPAPCSDPKKKRFRFNSESESSSSPSSPDGSGPSTKNRTTKKTCLRRALKKAVESTDEDHQ
TDLDAKMGLEESSEGEAEGSVRSGKVTEEEEDMKQEQKGQVRKQAGAKDKQVPLKADRKQVREESGSSEE
EAVLQRAKVEGSTGANCQEESEESGEESPAKKKELSEPRSRSNRAERTARERKSYKQKSRPGRPTGGLRD
SEAEKEGGTVGSGDSSEEGEAEKEGGTVGSGDSSEKGEAEKEEGTVGSGDSSEEGEEHSVKRKSKVRTQT
ESGRRQNTSSRDDSNSTQEQAAAQGTTKSGSLGSSNGDSDTEREVSDSQAGQNTKEERKSRSSNKSSKNG
QARSCSSSSDSSPEPTGQKGKARSSSSSSDSGPEPTGRKAASRCGEDHPAVARLKRYIRACGAHRNYKKL
LGSCSSHKARLSVLRAELEALGMKGNPSLEKCRALKLQREEAAEVAALDVANIISSTGRPRRRNAWNPSG
EGTSPGETYRRTLDSEEEQPRQAPPDWSHMRDIISSDGDSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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