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Report for CCDS22591.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22591.2 Public Mus musculus 8 Ces4a 23 108 98 CCDS HistoryNCBI Gene:234677Re-query CCDS DB by CCDS ID:22591.2See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 22591.2
The coding region has been updated to extend the N-terminus. The use of an alternative upstream start codon, which appears to be rodent-specific, would result in a protein that is 7 aa longer at the N-terminal.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 22591.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161289.1 ENSMUSP00000125062.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161289.1Link to Ensembl Protein Viewer:ENSMUSP00000125062.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161289Re-query CCDS DB by Protein ID:ENSMUSP00000125062
Original member Current member NCBI NM_146213.2 NP_666325.2 Accepted alive Link to Nucleotide Sequence:NM_146213.2Link to Protein Sequence:NP_666325.2Re-query CCDS DB by Nucleotide ID:NM_146213Re-query CCDS DB by Protein ID:NP_666325Link to BLAST:NP_666325.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666325.2 563 Q8R0W5 563 100% 0 0

Chromosomal Locations for CCDS 22591.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 105131952 105132030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105137972 105138173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105141937 105142078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105142358 105142491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105142756 105142909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105144931 105145035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105145116 105145220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105145367 105145405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105146077 105146217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105146626 105146706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105147083 105147239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105148068 105148196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105148371 105148443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105149370 105149520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1692 nt):
ATGGCAGAAGCTGGCTGGAACATGAAGTGGATTCTGGGCTTGAGCCTCACCCTGTGCCTGGTAGTCCAGA
CAGCCTTAGGTGCTTTGCACACCAAGGAACCTCTCCTGATCACCAAACACGGGATCCTCCAAGGAAAGCA
AGTGCATGTGGGAGACACACCCATCCAAGTCTTCCTGGGGATCCCCTTCTCTAAACCTCCGGTGGGCACC
CGCAGGTTTGCTCCTCCAGAGCCCCCGCTACCCTGGAACGGCATCAGAGATGCCACCACCTACCCACCTT
CGTGCCTTCAGGAATCCTGGGGACAGATATTATCCATGTACCTTAACACTCGGAAACAGTATAAATGGCT
GCATTTCAGTGAGGACTGCCTCTACCTGAATGTGTATGCCCCAGTACTCGCCCCTGGGGCCCCTCTGCTG
CCAGTGATGGTTTGGTTTCCTGGAGGTGCCTTCCTCGCCGGTTCGGCTTCCACCTACGAAGGCTCAGAGT
TGGCGGCCCGTGGGAAAGTGGTGCTGGTGTTTCTGCAGTACAGGCTGGGCATCCTGGGCTTCTTCAGCAC
CGGCAACAGCCATGCCCGCGGGAATTGGGGGCTGCTGGACCAGATAGCTGCTTTGCGGTGGGTGCAGGAG
AACATCGAAGCCTTTGGTGGAGACCCGGACAGTGTAACACTATTTGGTCAGTCGGCGGGAGCGATGAGCG
TCTCAGGACTGATGGTATCACCCCTAGCCCAGGGTCTGTTCCATCAAGCCATCTCCCAGAGTGGTACTGC
GGTCCTGAAAGCCTTCATCACTCCCGATCCACTGACGTCAGCCAAGAAGATCGCTCACCTGGCTGGCTGC
GACCACAATAGCACGAAGGTCATGGTGGAATGCCTGAGGTCTCTCTCAGCAGAGGAGGTGACGCTTGTTT
CCAAGAGGATGTCATTCTTTCAGGCTAACTCCCATAAAGATCCAAAAGAGATCGTGTGGTTCCTGAGCCC
AGTGGTGGATGGTGTGGTGTTCCCAGAAGATCCTGTGGTGCTCCTGACCCGTGGGCAGGTTAAACCTGTG
CCCTACCTCCTAGGTGTCAACAACGCAGAGTTCGAGTGGAACTTACCTTTTCTCATGAAGATTCAGCTAA
ATCAGCGTATGATGAACCAAACCAACATCAACAAAATACTCTGGAGTTTCAACGTTCTGCTGAATATCAC
TAAGGAGCAGGTCCCAGTGGTGGCAAGAGAGTATTTGAATGACGCTATCAGTAACCATGACTGGAAGATG
TTCCGAAATCGCCTGATAGACCTAATCGGAGATGCCACCTTTGTCTACGCCACACTCCAAGCTGCGAGGT
ACCACCGAGATGCTGGCTCCCCCGTCTATCTGTACGAGTTCAAGCACCATGCTTCTTCGGGCATCATCAT
CAAACCTTACAATGGAGCAGACCACGGAGACGAGCTTTCCTATCTCTTTGGCAGCCCTTTCTCCAAAGGC
TCATCTGCAGGTGAGGAAAAGGAATTCAGCCTCCAGATGATGAAATACTGGGCCAACTTTGCTCACACTG
GGAACCCCAATGGCGAAAAGCTGCCCTACTGGCCACGCTTTGACAAGGATGAGAAGTACCTGCAGTTGGA
CTTCGATACAAGAGTGGGTGTGAAGCTCAAGGAGAAAAAGATGGCTTTCTGGAGTCAGCTTCGCCAATCT
CAGAAACCTTAG

Translation (563 aa):
MAEAGWNMKWILGLSLTLCLVVQTALGALHTKEPLLITKHGILQGKQVHVGDTPIQVFLGIPFSKPPVGT
RRFAPPEPPLPWNGIRDATTYPPSCLQESWGQILSMYLNTRKQYKWLHFSEDCLYLNVYAPVLAPGAPLL
PVMVWFPGGAFLAGSASTYEGSELAARGKVVLVFLQYRLGILGFFSTGNSHARGNWGLLDQIAALRWVQE
NIEAFGGDPDSVTLFGQSAGAMSVSGLMVSPLAQGLFHQAISQSGTAVLKAFITPDPLTSAKKIAHLAGC
DHNSTKVMVECLRSLSAEEVTLVSKRMSFFQANSHKDPKEIVWFLSPVVDGVVFPEDPVVLLTRGQVKPV
PYLLGVNNAEFEWNLPFLMKIQLNQRMMNQTNINKILWSFNVLLNITKEQVPVVAREYLNDAISNHDWKM
FRNRLIDLIGDATFVYATLQAARYHRDAGSPVYLYEFKHHASSGIIIKPYNGADHGDELSYLFGSPFSKG
SSAGEEKEFSLQMMKYWANFAHTGNPNGEKLPYWPRFDKDEKYLQLDFDTRVGVKLKEKKMAFWSQLRQS
QKP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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