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Report for CCDS40627.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40627.1 Public Mus musculus 9 Sik2 23 108 98 CCDS HistoryNCBI Gene:235344Re-query CCDS DB by CCDS ID:40627.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40627.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041375.10 ENSMUSP00000038761.10 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041375.10Link to Ensembl Protein Viewer:ENSMUSP00000038761.10Re-query CCDS DB by Nucleotide ID:ENSMUST00000041375Re-query CCDS DB by Protein ID:ENSMUSP00000038761
Original member NCBI NM_178710.3 NP_848825.2 Updated not alive Link to Nucleotide Sequence:NM_178710.3Link to Protein Sequence:NP_848825.2Re-query CCDS DB by Nucleotide ID:NM_178710Re-query CCDS DB by Protein ID:NP_848825
Current member NCBI NM_178710.4 NP_848825.2 Accepted alive Link to Nucleotide Sequence:NM_178710.4Link to Protein Sequence:NP_848825.2Re-query CCDS DB by Nucleotide ID:NM_178710Re-query CCDS DB by Protein ID:NP_848825Link to BLAST:NP_848825.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848825.2 931 Q8CFH6 931 99.7852% 0 2

Chromosomal Locations for CCDS 40627.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 50893359 50893389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50895344 50895961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50896644 50896735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50897373 50897483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50898188 50898351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50898482 50898766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50899320 50899548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50907407 50907571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50913384 50913536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50915442 50915662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50917014 50917137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50917528 50917652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50935416 50935577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50995608 50995671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50998500 50998616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 51008741 51008875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2796 nt):
ATGGTCATGGCGGATGGCCCGAGGCACTTGCAGCGCGGGCCAGTCCGGGTGGGGTTCTACGACATCGAGG
GCACGCTGGGCAAGGGCAACTTTGCCGTGGTGAAGCTGGGGCGGCACCGGATCACCAAGACGGAGGTGGC
TATAAAAATAATAGACAAGTCACAGCTGGATGCAGTAAACCTTGAGAAAATCTACCGAGAAGTACAGATA
ATGAAAATGCTCGACCATCCTCACATCATTAAACTGTATCAGGTAATGGAGACCAAAAGTATGTTGTACC
TTGTGACAGAATATGCCAAAAATGGAGAAATTTTTGATTATCTTGCTAATCATGGCCGATTAAATGAATC
TGAAGCCAGGAGAAAATTCTGGCAAATTCTGTCTGCTGTTGATTATTGCCATGGCCGGAAGGTAGTGCAC
AGAGACCTGAAGGCTGAAAATCTCCTGCTGGATAACAACATGAATATCAAAATAGCAGATTTCGGCTTTG
GAAATTTCTTTAAAACTGGTGAACTGCTGGCAACATGGTGTGGCAGCCCCCCTTATGCAGCCCCAGAAGT
CTTTGAAGGGCAGCAGTATGAAGGACCACAGCTGGATATATGGAGCATGGGAGTTGTTCTTTATGTCCTT
GTCTGTGGAGCTCTACCTTTTGATGGACCAACTCTCCCTATTTTGAGGCAGAGGGTTTTAGAAGGAAGAT
TCCGGATTCCTTATTTCATGTCAGAAGATTGTGAACACCTCATTAGAAGGATGTTGGTCCTAGATCCTTC
CAAACGGCTAAGCATAGCTCAAATCAAGGAGCACAAGTGGATGCTCATAGAGGTTCCTGTACAGAGGCCT
ATTCTCTACCCACAAGAACAGGAAAACGAGCCGTCCATTGGAGAATTTAATGAGCAGGTTCTTCGACTGA
TGCACAGCCTTGGGATTGATCAGCAGAAGACTGTTGAGTCTTTGCAAAACAAGAGCTATAATCACTTTGC
TGCCATTTATTTCTTGTTGGTGGAACGTCTAAAATCACATAGGAGCAGTTTTCCTGTGGAGCAGAGACTT
GATGGCCGCCAGCGTCGGCCTAGCACCATTGCTGAACAAACAGTTGCCAAGGCACAAACTGTGGGGCTGC
CAGTGACCTTGCATCCACCGAACGTGAGACTGATGCGATCTACCCTCCTCCCACAGGCATCCAATGTGGA
GGCCTTTTCATTTCCAACATCCAGCTGTCAAGCAGAAGCTGCCTTTATGGAGGAAGAGTGTGTCGACACT
CCAAAGGTGAATGGCTGCCTGCTTGACCCTGTGCCCCCTGTCCTGGTGAGGAAGGGATGCCAGTCACTGC
CCAGCAGTATGATGGAGACCTCCATTGATGAAGGCTTGGAGACAGAAGGAGAGGCTGAGGAAGACCCCAG
TCAGGCCTTTGAAGCTTTCCAGGCCACACGCAGTGGGCAGCGACGGCACACTCTGTCAGAAGTGACTAAC
CAATTGGTTGTGATGCCCGGGGCAGGGAAAATGTTCTCCATGAGTGATAACCCCTCCCTTGAGAGTGTGG
ACTCTGAGTATGATATGGGGTCTGCCCAGAGGGACCTGAACTTTCTGGAAGACAGCCCTTCCTTGAAGGA
CATCATGTTAGCCAATCAGCCGTCACCCCGCATGACATCTCCTTTCATAAGCCTCAGACCTGCCAACCCA
GCCATGCAGGCTCTGAGCTCACAGAAGCGTGAGGCCCACAACCGGTCCCCCGTGAGCTTCCGAGAAGGCC
GCAGAGCATCAGATACGTCCCTTACACAAGGAATTGTAGCATTTAGACAACATCTTCAGAATCTTGCTAG
AACCAAAGGAATTCTGGAGTTGAACAAAGTACAATTGCTGTATGAACAAATGGGATCAAACGCAGACCCT
ACCTTAACATCAACTGCTCCTCAGCTCCAAGACCTTTCGAGCAGTTGCCCTCAGGAGGAAATCTCCCAGC
AGCAGGAAAGTGTCTCCAGCCTGTCTGCCAGCATGCACCCTCAGCTCTCACCACAGCAAAGCTTGGAAAC
CCAGTACCTACAGCATCGACTCCAGAAGCCCAATCTTCTGCCAAAGGCCCAGAGTCCTTGTCCAGTGTAT
TGTAAAGAGCCACCTCGGAGCCTGGAACAGCAGCTACAGGAGCATAGGCTCCAACAGAAGCGACTCTTCC
TCCAGAAGCAGTCTCAGCTGCAAGCATATTTTAATCAGATGCAGATAGCAGAGAGCTCCTACCCTGGACC
AAGTCAGCAGCTGGCTCTTCCCCACCAGGAGACTCCACTGACATCCCAGCAGCCCCCATCATTCAGCCTG
ACCCAGGCCCTGAGTCCTGTCCTCGAGCCCTCTTCTGAGCAGATGCAATTTAGCTCTTTCCTCAGCCAAT
ACCCAGAGATGCAGTTGCAGCCACTGCCCTCTACTCCCGGCCCCCAGGCTCCACCTCCCTTACCCTCACA
ATTGCAGCAACATCAGCAGCCACCACCCCCACCACCACCCCCTCCACCACAGCAGCCAGGAGCTGCTCCA
ACCTCCTTACAGTTCTCCTATCAGACTTGTGAGCTGCCAAGCACCACTTCTTCTGTACCAAACTATCCTG
CTTCCTGTCACTATCCTGTGGATGGAGCCCAGCAGAGCAACCTCACAGGGGCGGACTGTCCCAGGAGCTC
AGGACTTCAGGACACCGCATCTAGCTATGACCCACTGGCCCTCTCTGAGCTCCCTGGACTCTTTGATTGT
GAAATGGTAGAAGCTGTGGATCCACAACACAATGGGGTTGTGAGCTGCTTAGCCCGGGAGACCTAG

Translation (931 aa):
MVMADGPRHLQRGPVRVGFYDIEGTLGKGNFAVVKLGRHRITKTEVAIKIIDKSQLDAVNLEKIYREVQI
MKMLDHPHIIKLYQVMETKSMLYLVTEYAKNGEIFDYLANHGRLNESEARRKFWQILSAVDYCHGRKVVH
RDLKAENLLLDNNMNIKIADFGFGNFFKTGELLATWCGSPPYAAPEVFEGQQYEGPQLDIWSMGVVLYVL
VCGALPFDGPTLPILRQRVLEGRFRIPYFMSEDCEHLIRRMLVLDPSKRLSIAQIKEHKWMLIEVPVQRP
ILYPQEQENEPSIGEFNEQVLRLMHSLGIDQQKTVESLQNKSYNHFAAIYFLLVERLKSHRSSFPVEQRL
DGRQRRPSTIAEQTVAKAQTVGLPVTLHPPNVRLMRSTLLPQASNVEAFSFPTSSCQAEAAFMEEECVDT
PKVNGCLLDPVPPVLVRKGCQSLPSSMMETSIDEGLETEGEAEEDPSQAFEAFQATRSGQRRHTLSEVTN
QLVVMPGAGKMFSMSDNPSLESVDSEYDMGSAQRDLNFLEDSPSLKDIMLANQPSPRMTSPFISLRPANP
AMQALSSQKREAHNRSPVSFREGRRASDTSLTQGIVAFRQHLQNLARTKGILELNKVQLLYEQMGSNADP
TLTSTAPQLQDLSSSCPQEEISQQQESVSSLSASMHPQLSPQQSLETQYLQHRLQKPNLLPKAQSPCPVY
CKEPPRSLEQQLQEHRLQQKRLFLQKQSQLQAYFNQMQIAESSYPGPSQQLALPHQETPLTSQQPPSFSL
TQALSPVLEPSSEQMQFSSFLSQYPEMQLQPLPSTPGPQAPPPLPSQLQQHQQPPPPPPPPPPQQPGAAP
TSLQFSYQTCELPSTTSSVPNYPASCHYPVDGAQQSNLTGADCPRSSGLQDTASSYDPLALSELPGLFDC
EMVEAVDPQHNGVVSCLARET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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