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Report for CCDS10537.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10537.1 Public Homo sapiens 16 CARHSP1 24 110 108 CCDS HistoryNCBI Gene:23589Re-query CCDS DB by CCDS ID:10537.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10537.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311052.10 ENSP00000311847.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000311052.10Link to Ensembl Protein Viewer:ENSP00000311847.4Re-query CCDS DB by Nucleotide ID:ENST00000311052Re-query CCDS DB by Protein ID:ENSP00000311847
Original member Current member EBI ENST00000396593.6 ENSP00000379838.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396593.6Link to Ensembl Protein Viewer:ENSP00000379838.2Re-query CCDS DB by Nucleotide ID:ENST00000396593Re-query CCDS DB by Protein ID:ENSP00000379838
Original member Current member EBI ENST00000561530.5 ENSP00000455284.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000561530.5Link to Ensembl Protein Viewer:ENSP00000455284.1Re-query CCDS DB by Nucleotide ID:ENST00000561530Re-query CCDS DB by Protein ID:ENSP00000455284
Original member Current member EBI ENST00000567554.5 ENSP00000455855.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000567554.5Link to Ensembl Protein Viewer:ENSP00000455855.1Re-query CCDS DB by Nucleotide ID:ENST00000567554Re-query CCDS DB by Protein ID:ENSP00000455855
Original member Current member EBI ENST00000610831.4 ENSP00000478055.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000610831.4Link to Ensembl Protein Viewer:ENSP00000478055.1Re-query CCDS DB by Nucleotide ID:ENST00000610831Re-query CCDS DB by Protein ID:ENSP00000478055
Original member Current member EBI ENST00000619881.4 ENSP00000480144.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000619881.4Link to Ensembl Protein Viewer:ENSP00000480144.1Re-query CCDS DB by Nucleotide ID:ENST00000619881Re-query CCDS DB by Protein ID:ENSP00000480144
Original member Current member EBI ENST00000614449.4 ENSP00000480542.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000614449.4Link to Ensembl Protein Viewer:ENSP00000480542.1Re-query CCDS DB by Nucleotide ID:ENST00000614449Re-query CCDS DB by Protein ID:ENSP00000480542
Original member Current member EBI ENST00000611932.4 ENSP00000481550.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000611932.4Link to Ensembl Protein Viewer:ENSP00000481550.1Re-query CCDS DB by Nucleotide ID:ENST00000611932Re-query CCDS DB by Protein ID:ENSP00000481550
Original member Current member EBI ENST00000618335.4 ENSP00000483591.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000618335.4Link to Ensembl Protein Viewer:ENSP00000483591.1Re-query CCDS DB by Nucleotide ID:ENST00000618335Re-query CCDS DB by Protein ID:ENSP00000483591
Original member Current member NCBI NM_001042476.2 NP_001035941.1 Accepted alive Link to Nucleotide Sequence:NM_001042476.2Link to Protein Sequence:NP_001035941.1Re-query CCDS DB by Nucleotide ID:NM_001042476Re-query CCDS DB by Protein ID:NP_001035941Link to BLAST:NP_001035941.1
Original member Current member NCBI NM_001278260.2 NP_001265189.1 Accepted alive Link to Nucleotide Sequence:NM_001278260.2Link to Protein Sequence:NP_001265189.1Re-query CCDS DB by Nucleotide ID:NM_001278260Re-query CCDS DB by Protein ID:NP_001265189Link to BLAST:NP_001265189.1
Original member Current member NCBI NM_001278261.2 NP_001265190.1 Accepted alive Link to Nucleotide Sequence:NM_001278261.2Link to Protein Sequence:NP_001265190.1Re-query CCDS DB by Nucleotide ID:NM_001278261Re-query CCDS DB by Protein ID:NP_001265190Link to BLAST:NP_001265190.1
Original member Current member NCBI NM_001278262.2 NP_001265191.1 Accepted alive Link to Nucleotide Sequence:NM_001278262.2Link to Protein Sequence:NP_001265191.1Re-query CCDS DB by Nucleotide ID:NM_001278262Re-query CCDS DB by Protein ID:NP_001265191Link to BLAST:NP_001265191.1
Original member Current member NCBI NM_001278263.1 NP_001265192.1 Accepted alive Link to Nucleotide Sequence:NM_001278263.1Link to Protein Sequence:NP_001265192.1Re-query CCDS DB by Nucleotide ID:NM_001278263Re-query CCDS DB by Protein ID:NP_001265192Link to BLAST:NP_001265192.1
Original member Current member NCBI NM_001278264.2 NP_001265193.1 Accepted alive Link to Nucleotide Sequence:NM_001278264.2Link to Protein Sequence:NP_001265193.1Re-query CCDS DB by Nucleotide ID:NM_001278264Re-query CCDS DB by Protein ID:NP_001265193Link to BLAST:NP_001265193.1
Original member Current member NCBI NM_001278265.2 NP_001265194.1 Accepted alive Link to Nucleotide Sequence:NM_001278265.2Link to Protein Sequence:NP_001265194.1Re-query CCDS DB by Nucleotide ID:NM_001278265Re-query CCDS DB by Protein ID:NP_001265194Link to BLAST:NP_001265194.1
Original member Current member NCBI NM_001278266.2 NP_001265195.1 Accepted alive Link to Nucleotide Sequence:NM_001278266.2Link to Protein Sequence:NP_001265195.1Re-query CCDS DB by Nucleotide ID:NM_001278266Re-query CCDS DB by Protein ID:NP_001265195Link to BLAST:NP_001265195.1
Original member Current member NCBI NM_014316.4 NP_055131.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014316.4Link to Protein Sequence:NP_055131.2Re-query CCDS DB by Nucleotide ID:NM_014316Re-query CCDS DB by Protein ID:NP_055131Link to BLAST:NP_055131.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035941.1 147 Q9Y2V2 147 100% 0 0
NP_001265189.1 147 Q9Y2V2 147 100% 0 0
NP_001265190.1 147 Q9Y2V2 147 100% 0 0
NP_001265191.1 147 Q9Y2V2 147 100% 0 0
NP_001265192.1 147 Q9Y2V2 147 100% 0 0
NP_001265193.1 147 Q9Y2V2 147 100% 0 0
NP_001265194.1 147 Q9Y2V2 147 100% 0 0
NP_001265195.1 147 Q9Y2V2 147 100% 0 0
NP_055131.2 147 Q9Y2V2 147 100% 0 0

Chromosomal Locations for CCDS 10537.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 8855164 8855326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8858350 8858472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8859171 8859328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (444 nt):
ATGTCATCTGAGCCTCCCCCACCACCACAGCCCCCCACCCATCAAGCTTCAGTCGGGCTGCTGGACACCC
CTCGGAGCCGTGAGCGCTCACCATCCCCTCTGCGGGGCAACGTGGTCCCAAGCCCACTGCCCACTCGCCG
GACGAGGACCTTCTCGGCGACGGTGCGGGCTTCACAGGGCCCCGTCTACAAAGGAGTCTGCAAATGCTTC
TGCCGGTCCAAGGGCCATGGCTTCATTACTCCAGCTGATGGCGGCCCCGACATCTTCCTGCACATCTCTG
ATGTGGAAGGGGAGTATGTCCCAGTGGAAGGCGACGAGGTCACCTATAAAATGTGCTCCATCCCACCCAA
GAATGAGAAGCTGCAGGCCGTGGAGGTCGTCATCACTCACCTGGCACCAGGCACCAAGCATGAGACCTGG
TCTGGACATGTCATCAGCTCCTAG

Translation (147 aa):
MSSEPPPPPQPPTHQASVGLLDTPRSRERSPSPLRGNVVPSPLPTRRTRTFSATVRASQGPVYKGVCKCF
CRSKGHGFITPADGGPDIFLHISDVEGEYVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHETW
SGHVISS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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