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Report for CCDS1412.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1412.1 Public Homo sapiens 1 PHLDA3 24 110 108 CCDS HistoryNCBI Gene:23612Re-query CCDS DB by CCDS ID:1412.1See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 1412.1
This CCDS ID represents the protein described in PMID: 19203586 and is supported by BC014390.1. It should be noted this transcript is predicted to undergo nonsense-mediated mRNA decay (NMD). However, the protein is represented because it was detected endogenously in PMID: 19203586. It is likely that the majority of transcripts representing this variant will undergo NMD, while some low level of NMD escape may allow for the expression of this protein.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 1412.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367309.1 ENSP00000356278.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367309.1Link to Ensembl Protein Viewer:ENSP00000356278.1Re-query CCDS DB by Nucleotide ID:ENST00000367309Re-query CCDS DB by Protein ID:ENSP00000356278
Original member Current member EBI ENST00000367311.5 ENSP00000356280.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367311.5Link to Ensembl Protein Viewer:ENSP00000356280.3Re-query CCDS DB by Nucleotide ID:ENST00000367311Re-query CCDS DB by Protein ID:ENSP00000356280
Original member Current member NCBI NM_012396.5 NP_036528.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012396.5Link to Protein Sequence:NP_036528.1Re-query CCDS DB by Nucleotide ID:NM_012396Re-query CCDS DB by Protein ID:NP_036528Link to BLAST:NP_036528.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036528.1 127 Q9Y5J5 127 100% 0 0

Chromosomal Locations for CCDS 1412.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 201468403 201468786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (384 nt):
ATGACGGCGGCGGCGACGGCTACCGTGCTCAAGGAGGGCGTGCTGGAGAAGCGCAGCGGCGGGCTGCTGC
AGCTGTGGAAGCGGAAGCGCTGCGTCCTCACCGAACGCGGGCTGCAGCTCTTCGAGGCCAAGGGCACGGG
CGGCCGGCCCAAGGAGCTCAGCTTCGCCCGCATCAAGGCCGTGGAGTGCGTGGAGAGCACCGGGCGCCAC
ATCTACTTCACGCTGGTGACCGAAGGGGGCGGCGAGATCGACTTCCGCTGCCCCCTGGAAGATCCCGGCT
GGAACGCCCAGATCACCCTAGGCCTGGTCAAGTTCAAGAACCAGCAGGCCATCCAGACAGTGCGGGCCCG
GCAGAGCCTCGGGACCGGGACCCTCGTGTCCTAA

Translation (127 aa):
MTAAATATVLKEGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGTGGRPKELSFARIKAVECVESTGRH
IYFTLVTEGGGEIDFRCPLEDPGWNAQITLGLVKFKNQQAIQTVRARQSLGTGTLVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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