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Report for CCDS15996.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15996.1 Public Mus musculus 2 Or1af1 23 108 98 CCDS HistoryNCBI Gene:236509Re-query CCDS DB by CCDS ID:15996.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 15996.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091001.1 ENSMUSP00000088524.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091001.1Link to Ensembl Protein Viewer:ENSMUSP00000088524.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000091001Re-query CCDS DB by Protein ID:ENSMUSP00000088524
Original member Current member EBI ENSMUST00000214897.1 ENSMUSP00000150608.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214897.1Link to Ensembl Protein Viewer:ENSMUSP00000150608.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214897Re-query CCDS DB by Protein ID:ENSMUSP00000150608
Original member Current member NCBI NM_001005569.1 NP_001005569.1 Accepted alive Link to Nucleotide Sequence:NM_001005569.1Link to Protein Sequence:NP_001005569.1Re-query CCDS DB by Nucleotide ID:NM_001005569Re-query CCDS DB by Protein ID:NP_001005569Link to BLAST:NP_001005569.1

Chromosomal Locations for CCDS 15996.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 37219491 37220420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGCTCCGGGAAAACCAGAGCCACATGACAGAATTCCTCCTTTTAGGACTGACCAGCAACCCCAAACAAC
AGGTATGGCTTTTTGCCAGCTTCCTTGCCATGTACCTGGTCAATGTGATTGGCAACTCAGTCATCATTGC
ATCCATCCAGAGAGATGCCCGACTACACACTCCTATGTACTTCTTTCTCTCCAACCTGTCCCTGGTGGAC
ATCTGCTTTACCACTGTCATCGTGCCACAGATGTTAGTGAACTTGCTGACACAGAGAAAGACAATCCTCT
TTGCCCAGTGCCTCACTCAAATGTATTTCTTTGTGGCTTTTGGTATTACAGACAGTTTCCTTTTGGCTGC
GATGGCCATTGACCGCTATGTTGCTATTTGCAATCCACTTCATTACAACACAGTCATGAGTCCCAGGCGC
TGTCGCTTGCTGGTGGTGGCATCCTGGGCAGTGTCCCATCTTCACTCCCTCACCCACACAATTCTCATGG
GTCGCCTCTCTTTCTGTGGACCCAATGTCATTCATCACTTCTTTTGTGATGTCCAGCCACTGCTGACACT
CTCCTGCTCTGACACCTCTATCAATGAGCTCTTGGCCTTCACAGAGGGCTCTGTTGTAATCATGAGCCCT
TTTATCTTTATTGTTGTCTCTTATATCTATATCACTCGGACTGTTCTGAGGGTCCCCTCAGGGGAAGGAA
GGTACAAAGTTTTCTCTACCTGTGGGTCTCACCTCACAGTTGTAGCACTGTTCTATGGAACCATAATATC
AGTGTACATTCGCCCCTCATCCACCTACTCAGTGACAAAGGACCGAGTTGTCACTGTCATCTATACAGTA
GTTACCCCAATGCTGAATCCTTTCATCTACAGCCTTAGGAACAAAGACATGAAACAGGCCTTGAGAAAAC
TGGCTAAAAGAACAGAGTAG

Translation (309 aa):
MLRENQSHMTEFLLLGLTSNPKQQVWLFASFLAMYLVNVIGNSVIIASIQRDARLHTPMYFFLSNLSLVD
ICFTTVIVPQMLVNLLTQRKTILFAQCLTQMYFFVAFGITDSFLLAAMAIDRYVAICNPLHYNTVMSPRR
CRLLVVASWAVSHLHSLTHTILMGRLSFCGPNVIHHFFCDVQPLLTLSCSDTSINELLAFTEGSVVIMSP
FIFIVVSYIYITRTVLRVPSGEGRYKVFSTCGSHLTVVALFYGTIISVYIRPSSTYSVTKDRVVTVIYTV
VTPMLNPFIYSLRNKDMKQALRKLAKRTE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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