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Report for CCDS5667.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5667.1 Public Homo sapiens 7 ZKSCAN5 24 110 108 CCDS HistoryNCBI Gene:23660Re-query CCDS DB by CCDS ID:5667.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5667.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000326775.10 ENSP00000322872.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000326775.10Link to Ensembl Protein Viewer:ENSP00000322872.5Re-query CCDS DB by Nucleotide ID:ENST00000326775Re-query CCDS DB by Protein ID:ENSP00000322872
Original member Current member EBI ENST00000394170.6 ENSP00000377725.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394170.6Link to Ensembl Protein Viewer:ENSP00000377725.2Re-query CCDS DB by Nucleotide ID:ENST00000394170Re-query CCDS DB by Protein ID:ENSP00000377725
Original member Current member EBI ENST00000451158.5 ENSP00000392104.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000451158.5Link to Ensembl Protein Viewer:ENSP00000392104.1Re-query CCDS DB by Nucleotide ID:ENST00000451158Re-query CCDS DB by Protein ID:ENSP00000392104
Original member Current member NCBI NM_001318082.2 NP_001305011.1 Accepted alive Link to Nucleotide Sequence:NM_001318082.2Link to Protein Sequence:NP_001305011.1Re-query CCDS DB by Nucleotide ID:NM_001318082Re-query CCDS DB by Protein ID:NP_001305011Link to BLAST:NP_001305011.1
Original member Current member NCBI NM_014569.4 NP_055384.1 Accepted alive Link to Nucleotide Sequence:NM_014569.4Link to Protein Sequence:NP_055384.1Re-query CCDS DB by Nucleotide ID:NM_014569Re-query CCDS DB by Protein ID:NP_055384Link to BLAST:NP_055384.1
Original member Current member NCBI NM_145102.4 NP_659570.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145102.4Link to Protein Sequence:NP_659570.1Re-query CCDS DB by Nucleotide ID:NM_145102Re-query CCDS DB by Protein ID:NP_659570Link to BLAST:NP_659570.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001305011.1 839 Q9Y2L8 839 100% 0 0
NP_055384.1 839 Q9Y2L8 839 100% 0 0
NP_659570.1 839 Q9Y2L8 839 100% 0 0

Chromosomal Locations for CCDS 5667.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 99506045 99506458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99512453 99512591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99519827 99519909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99520169 99520304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99525813 99526418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99531108 99532249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2520 nt):
ATGATAATGACCGAATCCCGAGAAGTTATAGACTTAGACCCCCCAGCTGAGACTTCCCAGGAGCAGGAAG
ACCTTTTCATAGTGAAGGTGGAAGAAGAAGACTGCACCTGGATGCAGGAGTACAACCCGCCAACGTTTGA
GACTTTTTACCAGCGCTTCAGGCACTTCCAGTACCATGAGGCTTCAGGACCCCGGGAGGCTCTCAGCCAA
CTCCGGGTGCTCTGCTGTGAGTGGCTGAGGCCCGAGCTGCACACGAAGGAGCAGATCCTGGAGCTGCTGG
TGCTGGAGCAGTTCCTGACCATCCTGCCTGAAGAGTTCCAGCCCTGGGTGAGGGAACATCACCCTGAAAG
TGGAGAAGAGGCGGTGGCCGTGATAGAAAATATACAGCGAGAACTTGAGGAACGCAGACAGCAGATTGTT
GCCTGCCCTGATGTGCTTCCTCGGAAGATGGCAACACCTGGAGCAGTGCAGGAGTCCTGCAGCCCCCATC
CCCTGACCGTGGACACCCAGCCTGAGCAAGCGCCACAGAAGCCTCGTCTCCTGGAGGAAAATGCCCTTCC
TGTTCTCCAAGTTCCTTCCCTTCCCCTGAAGGACAGCCAGGAGCTGACAGCTTCACTTCTCTCAACTGGG
TCCCAGAAGTTGGTGAAAATTGAAGAGGTGGCTGATGTGGCTGTATCCTTCATCCTGGAGGAATGGGGGC
ATTTGGACCAGTCCCAGAAGTCCCTTTATAGGGATGACAGGAAGGAGAACTATGGGAGTATTACTTCCAT
GGGTTATGAGTCCAGGGACAATATGGAGCTCATAGTGAAGCAGATTTCTGATGACTCTGAATCACACTGG
GTGGCGCCAGAACACACCGAAAGGAGCGTTCCTCAGGATCCAGACTTTGCAGAAGTCAGTGACCTTAAAG
GCATGGTACAAAGGTGGCAGGTCAACCCCACTGTGGGGAAATCAAGGCAGAATCCTTCCCAGAAAAGGGA
TCTGGATGCAATCACAGACATCAGCCCTAAGCAAAGCACACATGGCGAGAGAGGGCACAGATGCAGCGAT
TGTGGCAAATTCTTCCTCCAAGCCTCAAACTTTATTCAGCATCGGCGCATCCACACTGGAGAAAAACCGT
TTAAGTGCGGAGAATGTGGGAAGAGCTACAATCAGCGGGTGCACCTCACCCAGCACCAGCGCGTCCACAC
AGGGGAGAAACCCTACAAATGTCAGGTGTGCGGAAAGGCTTTCCGGGTGAGTTCCCACCTGGTTCAGCAC
CACAGTGTCCACAGCGGAGAGAGGCCCTATGGCTGCAATGAGTGTGGGAAGAACTTCGGTCGCCATTCGC
ATCTGATCGAACACCTAAAACGCCACTTCAGGGAGAAATCCCAGAGATGCAGTGACAAAAGAAGTAAGAA
CACAAAATTAAGTGTTAAGAAGAAAATTTCAGAATATTCAGAAGCAGACATGGAACTATCTGGAAAAACC
CAAAGAAATGTTTCTCAAGTTCAAGATTTTGGAGAAGGCTGTGAGTTTCAAGGCAAGCTGGATAGAAAGC
AGGGAATTCCCATGAAAGAGATACTAGGACAACCATCTTCAAAGAGGATGAACTACAGTGAAGTCCCATA
TGTCCACAAAAAATCCTCCACTGGAGAGAGACCACATAAATGTAACGAGTGTGGGAAAAGCTTCATTCAG
AGTGCACATCTTATTCAACATCAAAGAATACACACTGGGGAGAAACCATTCAGGTGTGAGGAATGTGGGA
AAAGCTACAACCAACGCGTGCACCTAACTCAGCATCAGCGCGTCCACACAGGTGAGAAGCCCTACACCTG
TCCCTTATGTGGGAAAGCCTTCAGAGTGAGGTCCCACCTTGTTCAGCATCAGAGCGTGCACAGTGGGGAG
AGACCCTTCAAGTGTAACGAATGTGGGAAAGGCTTTGGGAGGCGTTCCCACCTGGCTGGACATCTTCGAC
TCCACTCCCGAGAGAAATCCCATCAGTGTCGTGAATGTGGGGAAATCTTTTTTCAGTACGTTAGCCTAAT
TGAACATCAGGTGCTCCACATGGGTCAGAAAAATGAAAAAAATGGCATCTGTGAGGAAGCATATAGTTGG
AACTTGACAGTGATTGAAGACAAGAAGATTGAGTTACAAGAGCAGCCTTATCAGTGTGATATCTGTGGAA
AAGCCTTTGGTTATAGCTCAGACCTCATTCAGCATTACAGAACTCATACAGCAGAGAAGCCCTATCAATG
TGATATATGTAGAGAAAATGTTGGCCAGTGTTCCCACACCAAACAACATCAAAAAATCTACTCCAGCACA
AAATCCCATCAATGTCATGAATGTGGCAGAGGCTTCACTCTGAAGTCACATCTTAATCAACATCAGAGAA
TCCATACTGGTGAGAAACCTTTTCAATGTAAAGAATGTGGAATGAATTTCAGCTGGAGTTGTAGCCTCTT
TAAACACCTGAGAAGCCATGAGAGGACAGATCCCATAAATACCTTAAGTGTAGAGGGGTCTCTGTTGTAG

Translation (839 aa):
MIMTESREVIDLDPPAETSQEQEDLFIVKVEEEDCTWMQEYNPPTFETFYQRFRHFQYHEASGPREALSQ
LRVLCCEWLRPELHTKEQILELLVLEQFLTILPEEFQPWVREHHPESGEEAVAVIENIQRELEERRQQIV
ACPDVLPRKMATPGAVQESCSPHPLTVDTQPEQAPQKPRLLEENALPVLQVPSLPLKDSQELTASLLSTG
SQKLVKIEEVADVAVSFILEEWGHLDQSQKSLYRDDRKENYGSITSMGYESRDNMELIVKQISDDSESHW
VAPEHTERSVPQDPDFAEVSDLKGMVQRWQVNPTVGKSRQNPSQKRDLDAITDISPKQSTHGERGHRCSD
CGKFFLQASNFIQHRRIHTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPYKCQVCGKAFRVSSHLVQH
HSVHSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSQRCSDKRSKNTKLSVKKKISEYSEADMELSGKT
QRNVSQVQDFGEGCEFQGKLDRKQGIPMKEILGQPSSKRMNYSEVPYVHKKSSTGERPHKCNECGKSFIQ
SAHLIQHQRIHTGEKPFRCEECGKSYNQRVHLTQHQRVHTGEKPYTCPLCGKAFRVRSHLVQHQSVHSGE
RPFKCNECGKGFGRRSHLAGHLRLHSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNEKNGICEEAYSW
NLTVIEDKKIELQEQPYQCDICGKAFGYSSDLIQHYRTHTAEKPYQCDICRENVGQCSHTKQHQKIYSST
KSHQCHECGRGFTLKSHLNQHQRIHTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPINTLSVEGSLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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