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Report for CCDS14336.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14336.1 Public Homo sapiens X GSPT2 24 110 108 CCDS HistoryNCBI Gene:23708Re-query CCDS DB by CCDS ID:14336.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14336.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340438.6 ENSP00000341247.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000340438.6Link to Ensembl Protein Viewer:ENSP00000341247.4Re-query CCDS DB by Nucleotide ID:ENST00000340438Re-query CCDS DB by Protein ID:ENSP00000341247
Original member Current member NCBI NM_018094.5 NP_060564.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018094.5Link to Protein Sequence:NP_060564.2Re-query CCDS DB by Nucleotide ID:NM_018094Re-query CCDS DB by Protein ID:NP_060564Link to BLAST:NP_060564.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060564.2 628 Q8IYD1 628 100% 0 0

Chromosomal Locations for CCDS 14336.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 51743627 51745513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1887 nt):
ATGGATTCGGGCAGCAGCAGCAGCGACTCGGCGCCCGATTGCTGGGACCAGGTGGACATGGAATCCCCGG
GGTCGGCCCCGAGCGGGGATGGAGTCTCCTCTGCGGTGGCCGAGGCCCAGCGCGAGCCCCTCAGCTCGGC
TTTCAGCCGTAAGCTCAACGTCAACGCCAAGCCCTTCGTGCCTAACGTACACGCCGCGGAGTTCGTGCCG
TCCTTCCTGCGGGGCCCGACTCAGCCGCCCACCCTCCCGGCCGGCTCCGGCAGCAACGATGAAACCTGCA
CCGGCGCGGGATACCCTCAAGGTAAAAGGATGGGACGGGGGGCACCTGTGGAACCTTCCCGAGAGGAACC
GTTAGTGTCGCTTGAAGGTTCCAATTCAGCCGTTACCATGGAACTTTCAGAACCTGTTGTAGAAAATGGA
GAGGTGGAAATGGCCCTAGAAGAATCATGGGAGCACAGTAAAGAAGTAAGTGAAGCCGAGCCTGGGGGTG
GTTCCTCGGGAGATTCAGGGCCCCCAGAAGAAAGTGGCCAGGAAATGATGGAGGAAAAAGAGGAAATAAG
AAAATCCAAATCTGTGATCGTACCCTCAGGTGCACCTAAGAAAGAACACGTAAATGTAGTATTCATTGGC
CATGTAGACGCTGGCAAGTCAACCATCGGAGGACAGATAATGTTTTTGACTGGAATGGTTGACAAAAGAA
CACTGGAGAAATATGAAAGAGAAGCTAAGGAAAAAAACAGAGAAACCTGGTATTTGTCCTGGGCCTTAGA
TACAAATCAGGAGGAACGAGACAAGGGTAAAACAGTCGAAGTGGGTCGTGCCTATTTTGAAACAGAAAGG
AAACATTTCACAATTTTAGATGCCCCTGGCCACAAGAGTTTTGTCCCAAATATGATTGGTGGTGCTTCTC
AAGCTGATTTGGCTGTGCTGGTCATCTCTGCCAGGAAAGGAGAGTTTGAAACTGGATTTGAAAAAGGTGG
ACAGACAAGAGAACATGCGATGTTGGCAAAAACGGCAGGGGTAAAACATTTAATAGTGCTTATTAATAAG
ATGGATGATCCCACAGTAAATTGGAGCATCGAGAGATATGAAGAATGTAAAGAAAAACTGGTGCCCTTTT
TGAAAAAAGTAGGCTTCAGTCCAAAAAAGGACATTCACTTTATGCCCTGCTCAGGACTGACCGGAGCAAA
TATTAAAGAGCAGTCAGATTTCTGCCCTTGGTACACTGGATTACCATTTATTCCGTATTTGGATAACTTG
CCAAACTTCAACAGATCAATTGATGGACCAATAAGACTGCCAATTGTGGATAAGTACAAAGATATGGGCA
CTGTGGTCCTGGGAAAGCTGGAATCCGGGTCCATTTTTAAAGGCCAGCAGCTCGTGATGATGCCAAACAA
GCACAATGTAGAAGTTCTTGGAATACTTTCTGATGATACTGAAACTGATTTTGTAGCCCCAGGTGAAAAC
CTCAAAATCAGACTGAAGGGAATTGAAGAAGAAGAGATTCTTCCAGGATTCATACTTTGTGATCCTAGTA
ACCTCTGCCATTCTGGACGCACGTTTGATGTTCAGATAGTGATTATTGAGCACAAATCCATCATCTGCCC
AGGTTATAATGCGGTGCTGCACATTCATACTTGTATTGAGGAAGTTGAGATAACAGCGTTAATCTCCTTG
GTAGACAAAAAATCAGGAGAAAAAAGTAAGACACGACCCCGCTTCGTGAAACAAGATCAAGTATGCATTG
CTCGTTTAAGGACAGCAGGAACCATCTGCCTCGAGACGTTCAAAGATTTTCCTCAGATGGGTCGTTTTAC
TTTAAGAGATGAGGGTAAGACCATTGCAATTGGAAAAGTTCTGAAATTGGTCCCAGAGAAGGACTAA

Translation (628 aa):
MDSGSSSSDSAPDCWDQVDMESPGSAPSGDGVSSAVAEAQREPLSSAFSRKLNVNAKPFVPNVHAAEFVP
SFLRGPTQPPTLPAGSGSNDETCTGAGYPQGKRMGRGAPVEPSREEPLVSLEGSNSAVTMELSEPVVENG
EVEMALEESWEHSKEVSEAEPGGGSSGDSGPPEESGQEMMEEKEEIRKSKSVIVPSGAPKKEHVNVVFIG
HVDAGKSTIGGQIMFLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETER
KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINK
MDDPTVNWSIERYEECKEKLVPFLKKVGFSPKKDIHFMPCSGLTGANIKEQSDFCPWYTGLPFIPYLDNL
PNFNRSIDGPIRLPIVDKYKDMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSDDTETDFVAPGEN
LKIRLKGIEEEEILPGFILCDPSNLCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISL
VDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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