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Report for CCDS25844.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25844.1 Public Mus musculus 12 Rrm2 23 108 98 CCDS HistoryNCBI Gene:20135Re-query CCDS DB by CCDS ID:25844.1Re-query CCDS DB by GeneID:20135See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25844.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020980.11 ENSMUSP00000020980.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020980.11Link to Ensembl Protein Viewer:ENSMUSP00000020980.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000020980Re-query CCDS DB by Protein ID:ENSMUSP00000020980
Original member Current member NCBI NM_009104.2 NP_033130.1 Accepted alive Link to Nucleotide Sequence:NM_009104.2Link to Protein Sequence:NP_033130.1Re-query CCDS DB by Nucleotide ID:NM_009104Re-query CCDS DB by Protein ID:NP_033130Link to BLAST:NP_033130.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033130.1 390 P11157 390 100% 0 0

Chromosomal Locations for CCDS 25844.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 24708347 24708445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24708560 24708634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24708939 24709085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24709325 24709441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24710357 24710490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24711447 24711541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24711669 24711802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24712661 24712765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24712861 24712974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24713080 24713232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1173 nt):
ATGCTCTCCGTCCGCACCCCGCTCGCCACCATCGCTGACCAGCAGCAGCTGCAGTTGTCGCCGCTGAAGC
GACTCACCCTGGCTGACAAGGAGAACACGCCCCCGACTCTCAGCAGCACCCGCGTCCTGGCCAGCAAAGC
TGCGAGGAGAATCTTCCAGGACTCCGCCGAGCTGGAAAGTAAAGCGCCTACTAACCCCAGCGTTGAGGAT
GAGCCGTTACTGAGAGAAAACCCCCGCCGCTTCGTTGTCTTTCCCATCGAGTACCATGATATCTGGCAGA
TGTACAAGAAAGCCGAGGCCTCCTTTTGGACTGCCGAGGAGGTGGACCTTTCCAAGGATATTCAGCACTG
GGAAGCTCTGAAACCCGATGAGAGACATTTTATATCTCACGTTCTGGCTTTCTTTGCAGCGAGTGATGGC
ATAGTCAATGAGAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAAGTTACAGAGGCCCGCTGTTTCTATG
GCTTCCAAATTGCCATGGAAAACATACACTCTGAAATGTACAGTCTCCTTATTGACACTTACATTAAAGA
TCCCAAGGAAAGAGAATATCTCTTCAATGCTATTGAAACAATGCCTTGTGTGAAGAAGAAGGCTGACTGG
GCCTTGCGCTGGATTGGGGACAAAGAGGCTACGTATGGAGAACGCGTTGTGGCCTTTGCCGCCGTAGAAG
GAATCTTCTTTTCCGGTTCTTTTGCATCGATATTCTGGCTCAAGAAACGGGGGCTGATGCCGGGCCTTAC
ATTTTCCAATGAGCTTATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAGCAC
CTGGTACACAAGCCAGCAGAGCAGAGGGTCCGAGAGATAATCACCAACGCCGTTAGGATAGAGCAGGAGT
TCCTCACGGAGGCCTTGCCCGTGAAGCTCATCGGGATGAACTGCACTTTGATGAAGCAGTACATTGAGTT
TGTGGCCGACAGGCTTATGCTGGAGCTGGGTTTTAACAAGATTTTCAGAGTAGAAAATCCGTTTGACTTC
ATGGAAAATATCTCACTAGAAGGAAAGACAAACTTCTTTGAGAAGCGAGTAGGCGAGTATCAGAGGATGG
GAGTCATGTCGAATTCGACAGAGAACTCTTTTACCTTGGATGCTGACTTCTAA

Translation (390 aa):
MLSVRTPLATIADQQQLQLSPLKRLTLADKENTPPTLSSTRVLASKAARRIFQDSAELESKAPTNPSVED
EPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDG
IVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIETMPCVKKKADW
ALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKH
LVHKPAEQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFRVENPFDF
MENISLEGKTNFFEKRVGEYQRMGVMSNSTENSFTLDADF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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