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Report for CCDS48439.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48439.1 Public Mus musculus 1 Fcrla 23 108 98 CCDS HistoryNCBI Gene:98752Re-query CCDS DB by CCDS ID:48439.1Re-query CCDS DB by GeneID:98752See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48439.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159171.1 ENSMUSP00000124853.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159171.1Link to Ensembl Protein Viewer:ENSMUSP00000124853.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159171Re-query CCDS DB by Protein ID:ENSMUSP00000124853
Original member Current member NCBI NM_145141.2 NP_660123.1 Accepted alive Link to Nucleotide Sequence:NM_145141.2Link to Protein Sequence:NP_660123.1Re-query CCDS DB by Nucleotide ID:NM_145141Re-query CCDS DB by Protein ID:NP_660123Link to BLAST:NP_660123.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660123.1 352 Q920A9-1 352 100% 0 0

Chromosomal Locations for CCDS 48439.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 170918150 170918394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170920834 170921118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170921518 170921784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170922222 170922404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170927462 170927540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1059 nt):
ATGAAGCTGAGCTGCACGCTCACACAGTGGGCCCTTTATGTCTGCCCTGCTGTGCTCCTGGCAACCCAGA
TGTTACTGGCTGCCAGTTCAGAGACTCTGAAGTGTGAAGGACTTGTCAGCACTGAGCAAGGCAGCTGCCA
GGCTGCTGCTGAGGAAGACGAGGGTGATGAAGATGATGGCGATATGACCCAATCCAGTGAAGCTGGCTTC
CAGTTCAAGGGCTACACATTCAGTAAACCCTTCCATCTCAGCGTGTCCTATGACTGGCTGATCCTTCAAG
GTCCAGCTACATTGATATTTGAAGGAGACACATTGGTTCTGCACTGCCGCGCCTGGCAAGACTGGCCACT
GACTCAGGTTATCTTCTACCGAGAGGGCTCCGCCTTGGGTCCTCCTGGACCTAAAAGTGAATTCTCCATC
ACCATGGTGCAAAAGTCAGACGGTGGGCACTACCACTGCAGTGGCATCTTCAGGAGCCCTGGTCCTGGGA
GCCGAGAGGCTGCATCCCCTGTGGCTATCACTGTCCAAGAGTTGTTTGCAGCCCCAGTTCTCAAAGCCTT
ACCTTCTAGTGAGCCCCAAGAGGGAGGCTCAGTAACCCTGAGCTGTCAGACAAAGCTGGCCCTGCAGAGG
TCAGCTTCCCGCCTCCTCTTCTCTTTCTACAAGGATGGAAGGTCACTGAGTGTCAGAGGAGTCTCTTCAG
AACTCAAGATCCCCAAAGCCTCAGAAGAACACTCTGGCTCCTACTGGTGTGAGGCAGTGACTGAGGACAG
ACAGATTTCGAAGCAGAGCCCACAACTGGAGATCTGGGTACAGGCTCTTCAGAAACCAACCGCTTCGGAA
ACTCCTCCCACAGAAGCTCTCGGTCCTCTGCCCCCACCACCTGCTTCTTCTGCTGAGCAGCCAAGATTCT
CCTCCCCAGACCCCCACCTTCATCACCAGATGCAGCTTCTTCTCAAACAAATACAAGATGTAAGAGCTCT
CCTCGGTCATCTGGTCATGGAGCTGAGGGACTTGTCTGTCTACCTGAAGCCTGGTACCACGAAGGTTGCT
GACAAATGA

Translation (352 aa):
MKLSCTLTQWALYVCPAVLLATQMLLAASSETLKCEGLVSTEQGSCQAAAEEDEGDEDDGDMTQSSEAGF
QFKGYTFSKPFHLSVSYDWLILQGPATLIFEGDTLVLHCRAWQDWPLTQVIFYREGSALGPPGPKSEFSI
TMVQKSDGGHYHCSGIFRSPGPGSREAASPVAITVQELFAAPVLKALPSSEPQEGGSVTLSCQTKLALQR
SASRLLFSFYKDGRSLSVRGVSSELKIPKASEEHSGSYWCEAVTEDRQISKQSPQLEIWVQALQKPTASE
TPPTEALGPLPPPPASSAEQPRFSSPDPHLHHQMQLLLKQIQDVRALLGHLVMELRDLSVYLKPGTTKVA
DK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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