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Report for CCDS24600.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24600.1 Public Mus musculus 11 Btnl9 23 108 98 CCDS HistoryNCBI Gene:237754Re-query CCDS DB by CCDS ID:24600.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24600.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046522.12 ENSMUSP00000046229.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046522.12Link to Ensembl Protein Viewer:ENSMUSP00000046229.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000046522Re-query CCDS DB by Protein ID:ENSMUSP00000046229
Original member Current member NCBI NM_172793.2 NP_766381.1 Accepted alive Link to Nucleotide Sequence:NM_172793.2Link to Protein Sequence:NP_766381.1Re-query CCDS DB by Nucleotide ID:NM_172793Re-query CCDS DB by Protein ID:NP_766381Link to BLAST:NP_766381.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766381.1 536 Q8BJE2-1 536 100% 0 0

Chromosomal Locations for CCDS 24600.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 49169054 49169691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49170597 49170623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49173212 49173238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49173453 49173473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49174826 49174858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49175568 49175696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49178715 49178996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49180541 49180888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 49182966 49183071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1611 nt):
ATGGCAGATTTCTCAGTATTTCTGGGGTTTCTGAAGCAAATACCTCGGTGCCTCAGCATCTTCTTCACCT
ACCTTCTCTTCCTTCAGTTGTGGGAGGTGAACTCAGACAAGGTCTGGGTGTTGGGCCCTGAGGAGTCCAT
TTTGGCCCGCGTCGGGGAAGCGGTGGAGTTCCCATGTCGCTTATCATCATACCAAGACGCAGAGCACATG
GAAATTCGCTGGTTTCGGGCCCAGGTCTCCAACGTGGTGTACCTGTACCAGGAGCCGCAGGGGCGCTCCA
GCCTGCAGATGGCACAGTTCCGAAACAGGACCTTATTTGAAGCCTATGACATTGCAGAGGGAAGCGTGAA
CCTACACATCCTTAAAGTGCTTCCCTCCGACGAGGGCCGATATGGGTGCCGCTTTCTTTCTGACAACTTC
TCTGGTGAAGCCACGTGGGAGCTGGAAGTAGCAGGATCGGGCTCAGACCCACACATCTCCCTCCAGGGCT
TCAGTGGAGAAGGTATTCAGCTGCAGTGCAGTTCCAGTGGCTGGTACCCCAAGCCAAAGGTTCAGTGGAG
AGGTCACCAGGGTCAGTGCCTTTCTCCAGAGTCTGAAGCCATCACCCAGAATGCCCAAGGCCTGTTCAGT
CTGGAGACATCCGTGATTGTCCGAGGAGGAGCCCATAGCAATGTGTCTTGTATAATCCAGAACCCCTTGC
TGCCCCAGAAGAAAGAATTCGTGATCCAGATTGCAGATGTGTTCCTACCCAGAATGTCCCCCTGGAAGAA
AGCGTTTGTGGGAACCCTGGTGGTCCTGCCGCTCAGTCTGATTGTGCTCACCATGCTGGCGCTGCGATAT
TTTTACAAGCTGCGGAGCTTCCAAGAAAAACAGGTGAAGCAGGGAGAGGAGGTCCGAGAGAAACTTCAGA
CAGAGCTTGACTGGAGAAGGTCTGAAGGCCAGGCTGAGTGGAGAGCAGCCCAGCAATATGCAGCGGATGT
GACCTTGGATCCTGCCACAGCGCACCCTAGCCTGGAGGTCTCCAACAACGGCAAGACCGTGTCCTCCCGC
CTGGGGGTGCCCAGTATTGCAGCTGGGGACCCGCAGCGGTTCTCGGAGCAGACCTGCGTGCTGAGCCGGG
AGCGCTTCTCCAGCGGCCGCCACTACTGGGAGGTGCACGTGGGCCGGCGCAGCCGCTGGTTCCTGGGCGC
CTGTCTGGAGTCGGTGGAGCGCTCCGGGCCCGCGCGCCTGAGCCCGGCGGCTGGCTACTGGGTGATGGGG
CTGTGGAACCGCTGCGAGTACTTCGTGCTGGACCCGCATCGCGTGGCACTGGCGCTACGCGTGCCTCCCC
GGAGGATAGGCGTCCTGTTGGACTACGAGGCCGGGAAGCTGTCTTTCTTCAACGTGTCTGATGGCTCGCA
CATCTTCAGCTTCACCGACACTTTCTCAGGGGCGCTCCGCGCCTACTTAAGGCCCCGAGCTCACGACGGC
AGTGAACATCCGGATCCTATGACCATCTGCTCTTTGCCGGTTAGAGGGCCACAGGTCCTCGAAGAGAACG
ACAACGACAACTGGCTACAGCCCTATGAGCCTCTGGACCCCGCCTGGGCTGTTAATGAGGCAGTGTCCTG
A

Translation (536 aa):
MADFSVFLGFLKQIPRCLSIFFTYLLFLQLWEVNSDKVWVLGPEESILARVGEAVEFPCRLSSYQDAEHM
EIRWFRAQVSNVVYLYQEPQGRSSLQMAQFRNRTLFEAYDIAEGSVNLHILKVLPSDEGRYGCRFLSDNF
SGEATWELEVAGSGSDPHISLQGFSGEGIQLQCSSSGWYPKPKVQWRGHQGQCLSPESEAITQNAQGLFS
LETSVIVRGGAHSNVSCIIQNPLLPQKKEFVIQIADVFLPRMSPWKKAFVGTLVVLPLSLIVLTMLALRY
FYKLRSFQEKQVKQGEEVREKLQTELDWRRSEGQAEWRAAQQYAADVTLDPATAHPSLEVSNNGKTVSSR
LGVPSIAAGDPQRFSEQTCVLSRERFSSGRHYWEVHVGRRSRWFLGACLESVERSGPARLSPAAGYWVMG
LWNRCEYFVLDPHRVALALRVPPRRIGVLLDYEAGKLSFFNVSDGSHIFSFTDTFSGALRAYLRPRAHDG
SEHPDPMTICSLPVRGPQVLEENDNDNWLQPYEPLDPAWAVNEAVS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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