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Report for CCDS6385.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6385.2 Public Homo sapiens 8 LY6K 24 110 108 CCDS HistoryNCBI Gene:54742Re-query CCDS DB by CCDS ID:6385.2Re-query CCDS DB by GeneID:54742See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 6385.1
The coding region has been updated to shorten the N-terminus to one that is more supported by the available conservation data. The updated protein has a predicted signal peptide, which was eliminated in the longer N-terminus of the previous representation.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 6385.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000292430.10 ENSP00000292430.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000292430.10Link to Ensembl Protein Viewer:ENSP00000292430.6Re-query CCDS DB by Nucleotide ID:ENST00000292430Re-query CCDS DB by Protein ID:ENSP00000292430
Original member Current member NCBI NM_017527.4 NP_059997.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017527.4Link to Protein Sequence:NP_059997.3Re-query CCDS DB by Nucleotide ID:NM_017527Re-query CCDS DB by Protein ID:NP_059997Link to BLAST:NP_059997.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059997.3 165 Q17RY6-1 165 100% 0 0

Chromosomal Locations for CCDS 6385.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 142700528 142700630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 142701600 142701713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 142703091 142703371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (498 nt):
ATGGCGCTGCTCGCCTTGCTGCTGGTCGTGGCCCTACCGCGGGTGTGGACAGACGCCAACCTGACTGCGA
GACAACGAGATCCAGAGGACTCCCAGCGAACGGACGAGGGTGACAATAGAGTGTGGTGTCATGTTTGTGA
GAGAGAAAACACTTTCGAGTGCCAGAACCCAAGGAGGTGCAAATGGACAGAGCCATACTGCGTTATAGCG
GCCGTGAAAATATTTCCACGTTTTTTCATGGTTGCGAAGCAGTGCTCCGCTGGTTGTGCAGCGATGGAGA
GACCCAAGCCAGAGGAGAAGCGGTTTCTCCTGGAAGAGCCCATGCCCTTCTTTTACCTCAAGTGTTGTAA
AATTCGCTACTGCAATTTAGAGGGGCCACCTATCAACTCATCAGTGTTCAAAGAATATGCTGGGAGCATG
GGTGAGAGCTGTGGTGGGCTGTGGCTGGCCATCCTCCTGCTGCTGGCCTCCATTGCAGCCGGCCTCAGCC
TGTCTTGA

Translation (165 aa):
MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRCKWTEPYCVIA
AVKIFPRFFMVAKQCSAGCAAMERPKPEEKRFLLEEPMPFFYLKCCKIRYCNLEGPPINSSVFKEYAGSM
GESCGGLWLAILLLLASIAAGLSLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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