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Report for CCDS49293.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49293.1 Public Mus musculus 13 Spata31d1c 23 108 98 CCDS HistoryNCBI Gene:238683Re-query CCDS DB by CCDS ID:49293.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49293.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099427.2 ENSMUSP00000097024.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099427.2Link to Ensembl Protein Viewer:ENSMUSP00000097024.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099427Re-query CCDS DB by Protein ID:ENSMUSP00000097024
Original member NCBI NM_001083890.2 NP_001077359.2 Updated not alive Link to Nucleotide Sequence:NM_001083890.2Link to Protein Sequence:NP_001077359.2Re-query CCDS DB by Nucleotide ID:NM_001083890Re-query CCDS DB by Protein ID:NP_001077359
Current member NCBI NM_001083890.3 NP_001077359.2 Accepted alive Link to Nucleotide Sequence:NM_001083890.3Link to Protein Sequence:NP_001077359.2Re-query CCDS DB by Nucleotide ID:NM_001083890Re-query CCDS DB by Protein ID:NP_001077359Link to BLAST:NP_001077359.2

Chromosomal Locations for CCDS 49293.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 65033089 65033265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 65033922 65033964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 65034559 65034619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 65034927 65037207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2562 nt):
ATGGAGAACATCCTCTCTTTTCTAAATAGATCATGGTTAGGCTTTGGATCAGCATTCTTGGATATTGGCT
CCAATTACATCTTTCTGAGTGGAGTTTGGTCTATTCTTCTATACCTGTGGTATTTGATACTGAAACAATT
CTTCCCACCACCTTGGAAAAGTCAGGACATCAAAAAGTACCAGGGCTCAGCTAACAAAGAAAGGAGGAAG
TCACTTAAAGGTTGTAGAATTACCCAGAGAAAGTCACAGGAACAGAGAGAGCTGCTGTCTGTTGTGCAAA
GCCCCCTAGGTGAAGAGTATGATTCTTCCAATTTTCGGCAACTACTGTGTCCAGATCCCTACTGTGGTGT
GTGTAATGGAGCAACTGCTAAGATCAGTCATCTGCTTTCTCAGGCCACTCACCAAGATGGCGCTGTCACT
ATGTCCAGTCTGGACTCCACAGTTTCTGTGACGGAGACAGCGCTGACTTTGTCCCTTCCTCTCCCAGAAA
ATACTATAGACTATCCTATTTCAGACACTGCATGTGAGCCTTCTCTACAGTCTTCCTCCATCATTTCATC
TCACCAAAGTGAGTACCTAGAAGACACACTTTCTCTCTCACCACTGGGTGGCTCTCTACTATCAGAGTCT
ACTCCTCCTGTGAATGCTAAATCCCCACTGGACCATTCTCTCCATTCACTTGCCTCTTTACCTCTTCCAC
AACAATATGTCACTCCGGAAACAGAACTGCTTCTCCAACCAACAACTGTTCTCTCTCTGGTGGACAGCCC
TATGGAGCTTTTCGCTAATGTTCCAATAAACAATGGCATTTGCAGTTCAAGTCATGCAATGTCAGAATTT
ATCCAGCAGCAGACTGATACAGGCAACTCTTCCCAGTTGGAGTCAGCACATCCAGTTAACCAAGAGCTTC
TTGACCCCTATTCTTCTGAATCCTACTTATGGGGAAACACCTCAACCTACCTCACATTGCCTGGAAACCT
TCACTTTTCCAGCCTTGGTGCCGTGGCACTACTTGAGACACAAGATGGAAGGAGGACTGATTCACTTAAA
ACTTGGGAGAAAACCTCAGAGTTTGATCATCAGAACTTGGCAGTTTCCCATTCTTTGGAGAGCAGTAAAG
AGAGACTTCACACACCCCAGCATTTGTCTTATTCCAAGACCTCTGAAGATCAGTTAGAGGATAAAAATAC
CCAGTCCTTCTGGGGACTCCCTTCTCTACACAGTGAGTCCATGAACTCTATTGCTACTGTGTTGACTGAC
AGTTCCCTGATCTCTGGGTGCTTCAACAGATTCTCAGATTCCCCAATGCTTACCCACCGCACAACTCTGC
CCTTGTCTGAAAGTCAACTACATAACTTGTCCCAAAGTCTGTCCCAATCTCAGTCCCAACCTGTCTCTCA
AGCCAACCTCCAGGCCCAGCTTCAACTCCCAAATCCAGTGCTATCACCTCATTCCCAACTTAGGATCTGT
GGGGTGTATTTTCACAGCCCCCAGAATGAGGCACAACCTCTTGAGCCAACTGCAATCCACTGCCTGGAAT
ACAACATATTGAAAAAGGAACAGGAAAGAGTATGGGGTTTACCCACTGTGGTCATAAATTCCCAACAAGA
ATTTTGTCCCCCACCTCCTAATCCCTCATTGGTCAGTCAGCTCTCCAAGACCCATGTTCCAAAGTCCATC
TCTATTGAAAAATGCTTTATCACCAGTGAGCTCCAGAAGAAATTTGAGCACCACCTTCGAAAGAGGCTCA
TCCTACAACGCTGGGGCCTGCCCAAGAGGATCCGTGAGTCTCTGCTATGGATAAATCCTCAGGCAGAACT
TCCAGAGTCACCCTCAGCCAAAAGCAACTATGGGCTTTCATGGATCCCCTTCTTTAAGCAACAGAGCAAG
AAAGACCTACACAAAACTATTTTGAGCCAACCTGGAAGCTTCCCAGCAAAGCAATTAGAGGAGAAACTGT
TGAAACTGTGTTCTAAGCAAGGCCTAGAAATGGTTCAAAAACAGCAGACATGGAGTAACACTAAGGGCAC
TCTAGATAACGGCCTGCAATCTGACTGTGAGACAAACCTACAATGCCACTCAGATAGTCTTTCATGCAAA
CCTTTAGGGACCTCAGAGGTGAGCCAATGTCAGAAAAAACTTGAAACTTCTCTGAAAGAACATTTGACCA
CACGTCTCAATGAAACCATTGAGCGTCAGATCACTAGCACTATGTCCGGATCAAGATATGGTCCTTTCCC
TTTTACCTCTTGTGTGAACAAGGAAGAACACAAGGCCCAGATGCCTTCTGATATCAAGGATAGGCATGTA
AAGAGCATATCTACAGCGAAAAAGTCTGTCAAGCAACAGACATCCTTTGACTTAGACAACACCAGCCTGG
AAGAGTCAAAGGGCAATAGACACAGCTCAGATGTGCCCAAAATGTTGGCTGAGGTCTTGGGTAAGAGACT
AACTTCTGGCAAAACAGTCCAGCGCCCTCAAGCAACAAAGATAATTGACAAAAAAATATTTGTATCCAAT
AAGGTCGGTAAGGGAGGGCAGCTCAGTGGCCTTCAACCGTGA

Translation (853 aa):
MENILSFLNRSWLGFGSAFLDIGSNYIFLSGVWSILLYLWYLILKQFFPPPWKSQDIKKYQGSANKERRK
SLKGCRITQRKSQEQRELLSVVQSPLGEEYDSSNFRQLLCPDPYCGVCNGATAKISHLLSQATHQDGAVT
MSSLDSTVSVTETALTLSLPLPENTIDYPISDTACEPSLQSSSIISSHQSEYLEDTLSLSPLGGSLLSES
TPPVNAKSPLDHSLHSLASLPLPQQYVTPETELLLQPTTVLSLVDSPMELFANVPINNGICSSSHAMSEF
IQQQTDTGNSSQLESAHPVNQELLDPYSSESYLWGNTSTYLTLPGNLHFSSLGAVALLETQDGRRTDSLK
TWEKTSEFDHQNLAVSHSLESSKERLHTPQHLSYSKTSEDQLEDKNTQSFWGLPSLHSESMNSIATVLTD
SSLISGCFNRFSDSPMLTHRTTLPLSESQLHNLSQSLSQSQSQPVSQANLQAQLQLPNPVLSPHSQLRIC
GVYFHSPQNEAQPLEPTAIHCLEYNILKKEQERVWGLPTVVINSQQEFCPPPPNPSLVSQLSKTHVPKSI
SIEKCFITSELQKKFEHHLRKRLILQRWGLPKRIRESLLWINPQAELPESPSAKSNYGLSWIPFFKQQSK
KDLHKTILSQPGSFPAKQLEEKLLKLCSKQGLEMVQKQQTWSNTKGTLDNGLQSDCETNLQCHSDSLSCK
PLGTSEVSQCQKKLETSLKEHLTTRLNETIERQITSTMSGSRYGPFPFTSCVNKEEHKAQMPSDIKDRHV
KSISTAKKSVKQQTSFDLDNTSLEESKGNRHSSDVPKMLAEVLGKRLTSGKTVQRPQATKIIDKKIFVSN
KVGKGGQLSGLQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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