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Report for CCDS49621.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49621.1 Public Mus musculus 15 Phf20l1 23 108 98 CCDS HistoryNCBI Gene:239510Re-query CCDS DB by CCDS ID:49621.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49621.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000229160.1 ENSMUSP00000155487.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000229160.1Link to Ensembl Protein Viewer:ENSMUSP00000155487.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000229160Re-query CCDS DB by Protein ID:ENSMUSP00000155487
Original member NCBI NM_001081409.1 NP_001074878.1 Updated not alive Link to Nucleotide Sequence:NM_001081409.1Link to Protein Sequence:NP_001074878.1Re-query CCDS DB by Nucleotide ID:NM_001081409Re-query CCDS DB by Protein ID:NP_001074878
Current member NCBI NM_001081409.2 NP_001074878.1 Accepted alive Link to Nucleotide Sequence:NM_001081409.2Link to Protein Sequence:NP_001074878.1Re-query CCDS DB by Nucleotide ID:NM_001081409Re-query CCDS DB by Protein ID:NP_001074878Link to BLAST:NP_001074878.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074878.1 1013 Q8CCJ9-6 1013 100% 0 0

Chromosomal Locations for CCDS 49621.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 66580106 66580188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66594807 66594978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66595115 66595199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66597359 66597447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66597677 66597754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66604027 66604240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66604780 66604905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66609526 66609608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66613021 66613270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66615220 66615408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66615638 66615847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66622761 66622817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66623992 66624099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66628925 66629089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66629800 66629981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66630867 66630966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66632706 66632901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66636684 66637032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66639913 66640075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66641798 66641940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3042 nt):
ATGAGTAAAAAGCCCCCAAATCGTCCTGGAATCACTTTTGAGATTGGTGCTCGTTTGGAGGCACTGGACT
ACTTACAGAAATGGTATCCATCCCGAATTGAAAAAATTGATTATGAAGAAGGGAAGATGCTAGTCCATTT
TGAGCGCTGGAGTCATCGATATGATGAGTGGATTTACTGGGACAGCAACAGGTTGCGACCCCTTGAGAGA
CCTGCACTAAGGAAAGAAGGGCTAAAGGATGAGGAAGAGCTCTTTGATTTTAAAGCTGGAGAAGAAGTAC
TGGCTCGTTGGACAGACTGTCGCTATTACCCTGCCAAGATTGAAGCAATTAACAAAGAAGGAACATTCAC
AGTTCAGTTTTATGATGGCGTAATCCGTTGTTTAAAAAGAATGCACATTAAAGCCATGCCTGAGGATGCT
AAGGGGCAGGTGAAATCCCAGCATCCACTAAGCTGGTGTTGTCCTATCGACCCAGCTGGATCGTGTAACC
AGTCTATGGGAAGTGAGGACTGGATTGCTTTAGTCAAAGCAGCTGCTGCAGCTGCAGCGAAAAATAAAAC
AGGGACTAAACCTCGAGCCAGTGCTAACAGCAATAAAGAGAAAGAGAGAGATGGGGGAAAATGGTTCAAA
TTACCTTCAAAGAAGGCAGAGACTTCAACGTGCATAGTCACAGCAGAGATTGAGAAGAAGGAGGAACTAC
CCACATCCAGTGAAACATTTGGACTTCACATAGACACCGTTCCAAAGATCGTCTTTCCACAGCCAGAGAG
CACATTAACAAACAAGAGGAAAAATAATCAAGGCAACTCATTTCAGGCAAAGAGAGCCCGACTTAACAAG
ATCACTGGTTTGTTGGCATCCAAAGCTGTTGGGGTGGATGGTGCTGAAAGAAAAGAAGACTGCAGTGCAA
CAGCTCCAGTCCTGGAGCAGGCGATTTCACCTAAACCTCAAAGTCAGAAAAAAAATGAAGCTGTCATTAG
CAGTTCTGCCAACACTCAGAAACCTGCACTGTTATCCTCAACTTTGTCTTCAGGGAAGGCTCGCAGCAAG
AAATGCAAACATGAATCTGGAGAGTCTTCTGGGTGTATAAAAACCCCTAAGTCACCACTTGCCCCAGAGT
TAATACAAGCCAAGGATTTGACGCTTGTATCTCAGCTTTCTTCAGTGATAAATAAAACTAGTTCTCCACA
GCCTGTGAATCCCCCTAGACCTTGCAAGCATAGTGAGAGAAGAAGAAGATCCCAGCGCTTAGCCACCTTA
CCCATGCCTGATGACTCTCTAGAAAAGCTTTCTTCTTCCTCTTCAGCAACTGATGGCAAAGCATTCTCCA
TCAGTTCTCAGAATCAGCAACAGTCTTCAGTACCAGAGGTGCCTGCTATCGCGTATGTGCCGCTCCAGAA
GCTGGGCCCCTGCCTCCCTCTTGATTTAAGTTGTGGTTCAGAAGTCACAGGGAGTAGAACCCCACATCCC
TCCTATCATGGTGGTGAATGTCCCAGGGAAGAAAAGGAGGAGACGCCGTTGTTTGCAAATCCCACCTCCA
AAGTAGTGAGTGATGTAAAAGGAGCTGCAGCAGCTACAGGAATATCGAAAACAGAAAAAAAGGTGAAATT
GGAAGAAAAAACCTCCACTGCATTTGGTAAAAGGAAAGAAAAGGATAAGGAAAAAAAAGAGAAGCGAGAC
AAAGATCACTACAAACCAAAGCAGAAGAAAAAGAAGAAGAAGAAAAAGAAATCTAAACAGCACGATTATT
CGGACTATGAAGACAGTTCCCTAGACTTTTTGGAAAGGTGTTCTTCTCCACTAACTAGATCTTCTGGGAG
TTCTCTGGCTCCACGAAGCACATTTACGGAGAAAACTACAACTTATCAGTACCCGAGGGCAATTCTGTCT
GTTGATCTTAGTGGTGAAAATTTGTCAGATGTGGAATTCCTGGATGACTCTTCCACAGAGAGCCTGCTTC
TGAGTGGGGATGAGTACAACCAAGACTTTGATTCAACTAATTTTGAGGAGTCTCAGGATGAAGACGATGC
TCTTAATGAGATTGTACGCTGTATCTGTGAACTGGATGAGGAGAATGGCTTCATGATCCAGTGTGAAGAG
TGCCTATGCTGGCAGCACAGTGTGTGCATGGGGCTCCTGGAGGACAGCATTCCGGAGCAGTACATCTGCT
ACATCTGTCGGGACCCTCCGGGTCAGAGATGGAGTGCAAAATATCGTTATGATAAGGAGTGGTTGAATAA
TGGAAGAATGTATGGGTTATCTTTTTTAAAAGAAAATTATTCTCATCTCAATGCCAAAAAAATAGTTTCC
ACACATCATCTTCTTGCTGATGTCTATGGTGTAACTGAAGTACTGCATGGATTACAGCTTAAGATTGGAA
TACTAAAGAATAAACATCATCCTGACCTTCATCTCTGGGCTTATTCTGGGAAGAGGAAAGACCAAGATCA
GGCAGTAGCTGAAGCAGAGAGAAAAATAACACCTCAGGACAGAGCTAACTCAGAGGGGAAGGAGTGTGTA
CAGAACCACAAGGAACCAGCCCTGAGAATGGAAGAAACTTACATAACAAGCGAGCACAGCTATCAAAAGC
CACAAAGCTTTAGTCAGGACTGCCAGTCTCTCACAGACCCTGGAAGCTCAGATGATGATGATGCTAGCAG
TTTTGAAGAAGATGGGGAGCTCCGTGTGCCAGATAAAAGCCATCTTCTGTACAAAAATCGGGGAGTGTCA
GAGAAGAATCCAGCTTCAGGGAATAAAGTGTTTGTTTATAATGATAAAAAGGGCACGGAGGGCCCAGGAG
ACTCGCATCTTCAGTGGCAGCTAAATCTCCTCACGCACATAGAAAATGTGCAGAATGAAGTCACCAGCAG
GATGGACCTCATAGAAAAAGAAGTGGACGTTCTGGAAAGCTGGCTTGATTTCACAGGGGAGTTGGAGCCA
CCAGATCCCCTTGCAAGACTGCCCCAACTTAAACGTCACTTAAAACAACTCTTACTTGACGTGGGCAAAG
TACAACAAATTGCAACTCTTTGCTCTGTATAA

Translation (1013 aa):
MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSNRLRPLER
PALRKEGLKDEEELFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQFYDGVIRCLKRMHIKAMPEDA
KGQVKSQHPLSWCCPIDPAGSCNQSMGSEDWIALVKAAAAAAAKNKTGTKPRASANSNKEKERDGGKWFK
LPSKKAETSTCIVTAEIEKKEELPTSSETFGLHIDTVPKIVFPQPESTLTNKRKNNQGNSFQAKRARLNK
ITGLLASKAVGVDGAERKEDCSATAPVLEQAISPKPQSQKKNEAVISSSANTQKPALLSSTLSSGKARSK
KCKHESGESSGCIKTPKSPLAPELIQAKDLTLVSQLSSVINKTSSPQPVNPPRPCKHSERRRRSQRLATL
PMPDDSLEKLSSSSSATDGKAFSISSQNQQQSSVPEVPAIAYVPLQKLGPCLPLDLSCGSEVTGSRTPHP
SYHGGECPREEKEETPLFANPTSKVVSDVKGAAAATGISKTEKKVKLEEKTSTAFGKRKEKDKEKKEKRD
KDHYKPKQKKKKKKKKKSKQHDYSDYEDSSLDFLERCSSPLTRSSGSSLAPRSTFTEKTTTYQYPRAILS
VDLSGENLSDVEFLDDSSTESLLLSGDEYNQDFDSTNFEESQDEDDALNEIVRCICELDEENGFMIQCEE
CLCWQHSVCMGLLEDSIPEQYICYICRDPPGQRWSAKYRYDKEWLNNGRMYGLSFLKENYSHLNAKKIVS
THHLLADVYGVTEVLHGLQLKIGILKNKHHPDLHLWAYSGKRKDQDQAVAEAERKITPQDRANSEGKECV
QNHKEPALRMEETYITSEHSYQKPQSFSQDCQSLTDPGSSDDDDASSFEEDGELRVPDKSHLLYKNRGVS
EKNPASGNKVFVYNDKKGTEGPGDSHLQWQLNLLTHIENVQNEVTSRMDLIEKEVDVLESWLDFTGELEP
PDPLARLPQLKRHLKQLLLDVGKVQQIATLCSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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