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Report for CCDS39150.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39150.1 Public Mus musculus 5 Uso1 23 108 98 CCDS HistoryNCBI Gene:56041Re-query CCDS DB by CCDS ID:39150.1Re-query CCDS DB by GeneID:56041See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39150.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031355.9 ENSMUSP00000031355.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031355.9Link to Ensembl Protein Viewer:ENSMUSP00000031355.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000031355Re-query CCDS DB by Protein ID:ENSMUSP00000031355
Original member NCBI NM_019490.1 NP_062363.1 Updated not alive Link to Nucleotide Sequence:NM_019490.1Link to Protein Sequence:NP_062363.1Re-query CCDS DB by Nucleotide ID:NM_019490Re-query CCDS DB by Protein ID:NP_062363
Current member NCBI NM_019490.2 NP_062363.1 Accepted alive Link to Nucleotide Sequence:NM_019490.2Link to Protein Sequence:NP_062363.1Re-query CCDS DB by Nucleotide ID:NM_019490Re-query CCDS DB by Protein ID:NP_062363Link to BLAST:NP_062363.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062363.1 959 Q9Z1Z0-1 959 100% 0 0

Chromosomal Locations for CCDS 39150.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 92138098 92138163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92152441 92152527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92152852 92152916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92158404 92158480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92166531 92166631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92167026 92167128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92167278 92167333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92170673 92170793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92173926 92174104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92177435 92177575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92180542 92180630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92181340 92181494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92181898 92182109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92187235 92187345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92187698 92187816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92187943 92188124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92189223 92189344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92192713 92192851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92194012 92194175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92195348 92195434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92198336 92198434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92199817 92199924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92201135 92201350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92201857 92201937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2880 nt):
ATGAATTTCCTCCGTGGGGTGATGGGGGGTCAGAGTGCCGGACCCCAGCACACTGAAGCCGAGACGATTC
AGAAGCTCTGTGACCGCGTAGCTTCCTCTACGTTACTGGATGACCGAAGAAATGCTGTACGTGCCCTTAA
ATCACTCTCTAAGAAATACCGCTTAGAAGTGGGAATCCAAGCTATGGAACATCTTATCCATGTTTTACAA
ACAGATCGTTCGGATTCTGAAATAATAGCATATGCTTTGGACACACTTTATAATATAATATCTAATGACG
AAGAGGAAGAACTAGAAGAAAATTCTACAAGACAGAGTGAGGATTTGGGAAGCCAGTTTACAGAAATTTT
CATTAAGCAGCCAGAAAATGTCACTCTCCTGTTATCTTTGTTGGAGGAGTTTGATTTCCACGTCCGTTGG
CCTGGCGTGAGACTCCTGACTTCTCTTTTAAAGCAGCTAGGGCCTCCCGTGCAGCAGATCATCCTAGTCA
GCCCCATGGGTGTTTCAAGATTAATGGACTTACTAGCAGATTCCAGAGAAATTATACGCAACGATGGCGT
CTTACTACTGCAGGCATTAACAAGGAGCAATGGAGCAATCCAGAAAATTGTTGCTTTTGAAAATGCTTTT
GAGCGACTGCTGGACATTATTACAGAGGAGGGGAACAGTGACGGAGGTATAGTAGTGGAAGATTGTTTGA
TTTTACTTCAAAACTTGTTAAAAACCAACAATTCCAATCAAAACTTTTTTAAAGAAGGCTCTTATATTCA
ACGCATGAAACCTTGGTTTGAAGTTGGAGAGGAAAACTCTGGTTGGTCAGCACAGAAAGTGACCAATCTA
CATTTAATGCTCCAGCTTGTGCGGGTACTGGTATCTCCCACCAACCCTCCCGGTGCTACCAGTAGCTGCC
AGAAGGCCATGTTCCAGTGTGGGCTACTCCAGCAGCTTTGCACTATCCTGATGGCTACTGGGATTCCTGC
TGATATCCTGACAGAGACCATAAATACTGTATCAGAGGTTATCCGAGGCTGCCAAGTAAACCAAGACTAC
TTTGCTTCTGTGAATGCACCTTCAAATCCCCCACGACCGGCAATTGTTGTGCTGCTCATGTCCATGGTCA
ACGAGCGGCAGCCGTTTGTGCTGCGATGTGCCGTGCTCTACTGTTTCCAGTGCTTCCTGTATAAAAACGA
GAAAGGACAAGGAGAGATCGTGGCCACTCTTCTGCCTTCCACTATTGATGCAACAGGTAACTCCGTCTCA
GCCGGTCAGCTGCTCTGCGGAGGTTTGTTTTCTACAGACTCTCTCTCTAACTGGTGTGCTGCTGTGGCCC
TCGCCCATGCGCTGCAGGGAAATGCCACCCAGAAAGAGCAACTGCTCAGGGTTCAGCTGGCCACCAGCAT
CGGCAACCCTCCGGTGTCGCTCCTGCAGCAATGCACCAACATTCTTTCCCAGGGAAGCAAAATACAGACA
AGAGTCGGGTTGTTAATGTTGCTCTGTACCTGGCTAAGCAACTGTCCTATTGCTGTAACACATTTTCTTC
ACAACTCAGCCAATGTTCCATTCCTTACAGGACAGATTGCAGAAAATCTCGGAGAAGAAGAGCAGTTGGT
CCAAGGCTTATGTGCCCTTCTTTTGGGCATTTCAATTTATTTCAACGATAACTCACTAGAAAACTACACA
AAAGAGAAACTAAAGCAACTAATAGAGAAGAGGATTGGCAAAGAGAATTTCATAGAGAAACTAGGATTTA
TTAGCAAACATGAGTTATATTCCAGAGCGTCTCAGAAACCCCAGCCAAACTTTCCGAGTCCAGAGTATAT
GATATTTGATCATGAGTTTACAAAGCTGGTGAAAGAACTCGAAGGTGTTATTACCAAGGCTATTTATAAG
TCCAGTGAGGAAGATAAGAAAGAGGAAGAGGTAAAGAAAACCTTAGAGCAGCATGATAACATCGTGACTC
ACTATAAGAATATGATCCGTGAGCAAGACCTACAACTGGAGGAACTGAAACAGCAAGTCTCCACCCTGAA
GTGTCAGAACGAGCAGCTACAGACAGCAGTCACCCAGCAGGCATCTCAGATTCAGCAGCACAAGGACCAG
TACAATCTCCTCAAAGTTCAGCTCGGAAAAGACAATCACCATCAAGGTTCCCACGGTGACGGGGCTCAGG
TGAATGGCATTCAGCCGGAAGAAATCAGTCGGCTGAGGGAAGAGATAGAAGAGTTAAAAAGTCAGCAGGC
GCTCTTACAAGGCCAGCTAGCTGAAAAGGACTCATTGATTGAAAATTTGAAATCTTCGCAAGCGTCTGGC
ATGAGTGAACAGGCTTCAGCAACATGTCCTCCCAGAGATCCCGAGCAAGTTGCAGAGTTAAAGCAGGAAC
TGACAGCATTAAAGTCCCAGTTATGTTCACAGTCTCTGGAGATCACGAGACTCCAGACGGAGAACTGCGA
GCTGCTGCAGAGAGCAGAGACCTTGGCAAAATCAGTTCCTGTAGAAGGAGAGAGTGAGCATGTGAGTGCT
GCTAAGACCACGGATGTAGAAGGAAGGCTGTCTGCTTTGCTGCAGGAGACCAAAGAGTTAAAGAATGAGA
TTAAAGCGCTGTCTGAGGAGAGGACCGCCATTCAAAAGCAGCTGGACTCATCCAATAGCACCATCGCCAT
CCTGCAAACCGAGAAAGACAAGCTGGACTTGGAAGTTACGGATTCTAAGAAAGAACAAGATGACCTTTTG
GTGCTGTTAGCAGATCAAGATCAGAAAATCCTGTCACTGAAGAGTAAACTCAAGGATCTCGGTCATCCAG
TTGAAGAAGAAGATGAATCTGGAGACCAAGAAGACGATGATGATGAAATTGATGATGGTGACAAGGACCA
GGACATCTAG

Translation (959 aa):
MNFLRGVMGGQSAGPQHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQ
TDRSDSEIIAYALDTLYNIISNDEEEELEENSTRQSEDLGSQFTEIFIKQPENVTLLLSLLEEFDFHVRW
PGVRLLTSLLKQLGPPVQQIILVSPMGVSRLMDLLADSREIIRNDGVLLLQALTRSNGAIQKIVAFENAF
ERLLDIITEEGNSDGGIVVEDCLILLQNLLKTNNSNQNFFKEGSYIQRMKPWFEVGEENSGWSAQKVTNL
HLMLQLVRVLVSPTNPPGATSSCQKAMFQCGLLQQLCTILMATGIPADILTETINTVSEVIRGCQVNQDY
FASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNEKGQGEIVATLLPSTIDATGNSVS
AGQLLCGGLFSTDSLSNWCAAVALAHALQGNATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQT
RVGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAENLGEEEQLVQGLCALLLGISIYFNDNSLENYT
KEKLKQLIEKRIGKENFIEKLGFISKHELYSRASQKPQPNFPSPEYMIFDHEFTKLVKELEGVITKAIYK
SSEEDKKEEEVKKTLEQHDNIVTHYKNMIREQDLQLEELKQQVSTLKCQNEQLQTAVTQQASQIQQHKDQ
YNLLKVQLGKDNHHQGSHGDGAQVNGIQPEEISRLREEIEELKSQQALLQGQLAEKDSLIENLKSSQASG
MSEQASATCPPRDPEQVAELKQELTALKSQLCSQSLEITRLQTENCELLQRAETLAKSVPVEGESEHVSA
AKTTDVEGRLSALLQETKELKNEIKALSEERTAIQKQLDSSNSTIAILQTEKDKLDLEVTDSKKEQDDLL
VLLADQDQKILSLKSKLKDLGHPVEEEDESGDQEDDDDEIDDGDKDQDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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