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Report for CCDS49958.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49958.1 Public Mus musculus 17 Thbs2 23 108 98 CCDS HistoryNCBI Gene:21826Re-query CCDS DB by CCDS ID:49958.1Re-query CCDS DB by GeneID:21826See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49958.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170872.2 ENSMUSP00000128308.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170872.2Link to Ensembl Protein Viewer:ENSMUSP00000128308.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170872Re-query CCDS DB by Protein ID:ENSMUSP00000128308
Original member Current member NCBI NM_011581.3 NP_035711.2 Accepted alive Link to Nucleotide Sequence:NM_011581.3Link to Protein Sequence:NP_035711.2Re-query CCDS DB by Nucleotide ID:NM_011581Re-query CCDS DB by Protein ID:NP_035711Link to BLAST:NP_035711.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035711.2 1172 Q03350 1172 100% 0 0

Chromosomal Locations for CCDS 49958.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 14667513 14667520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 14668725 14668864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 14669972 14670069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 14670594 14670865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 14671273 14671500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 14673144 14673378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 14674046 14674164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 14676207 14676366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 14676986 14677093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 14678686 14678904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 14679682 14679834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 14679911 14680038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 14680293 14680466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 14681239 14681415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 14681665 14681835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 14683289 14683385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 14684072 14684212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 14685746 14685942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 14687806 14687890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 14689727 14690283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 14691363 14691414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3519 nt):
ATGCTCTGGGCACTGGCCCTGCTGGCTCTGGGCATAGGGCCAAGAGCTTCTGCTGGTGACCACGTCAAGG
ACACTTCATTTGACCTTTTCAGCATCAGCAACATTAACCGGAAGACCATCGGTGCCAAGCAGTTCCGAGG
GCCTGACCCCGGGGTGCCCGCCTACCGTTTTGTACGGTTTGACTACATCCCCCCAGTGAACACAGATGAT
CTCAACAGGATTGTCAAGCTTGCAAGGAGAAAGGAGGGCTTCTTCCTCACAGCCCAACTGAAGCAGGACC
GCAAGTCTCGGGGAACGCTCCTGGTGTTGGAAGGCCCCGGCACCTCCCAGAGGCAGTTTGAGATTGTGTC
CAATGGCCCAGGGGACACTTTGGACCTCAACTACTGGGTAGAAGGCAATCAGCATACCAACTTCCTGGAG
GATGTGGGCCTGGCTGACTCCCAGTGGAAGAATGTGACTGTGCAGGTGGCCAGTGACACCTATAGCCTGT
ATGTGGGCTGCGATCTTATCGACAGTGTCACCCTGGAAGAACCATTCTATGAGCAGCTAGAAGTAGACAG
GAGCAGGATGTACGTGGCCAAAGGTGCATCTCGAGAGAGTCACTTCAGGGGCTTGCTGCAGAATGTCCAT
CTCGTGTTTGCAGATTCTGTGGAAGATATCTTAAGCAAGAAAGGCTGTCAACACAGCCAGGGAGCTGAAG
TCAACACCATCAGTGAACATACAGAGACTCTCCATCTGAGCCCTCACATCACCACAGATCTCGTGGTCCA
GGGTGTGGAGAAGGCACAGGAGGTGTGTACGCACTCCTGCGAGGAGTTGAGCAACATGATGAATGAGCTC
TCTGGACTGCACGTCATGGTGAACCAGCTGAGCAAGAACCTGGAGAGAGTGTCTAGTGATAACCAGTTCC
TTTTGGAGCTCATTGGGGGCCCTCTGAAGACAAGAAACATGTCAGCCTGTGTGCAGGAGGGCCGAATCTT
TGCAGAAAATGAAACCTGGGTTGTGGATAGTTGTACCACATGCACCTGCAAGAAATTTAAAACAGTCTGC
CATCAGATCACCTGCTCACCTGCAACTTGTGCCAACCCATCTTTTGTGGAAGGCGAGTGCTGTCCATCCT
GTTCACACTCTGCAGACAGTGATGAGGGCTGGTCTCCGTGGGCAGAGTGGACCGAGTGTTCTGTCACCTG
TGGCTCTGGGACCCAGCAGAGAGGCCGGTCTTGTGATGTCACCAGCAACACCTGCCTGGGCCCCTCCATT
CAGACAAGGACATGCAGCCTGGGCAAATGTGATACGAGAATCCGTCAGAATGGAGGCTGGAGTCACTGGT
CACCCTGGTCTTCATGCTCCGTGACTTGTGGAGTTGGCAATGTCACCCGCATACGTCTCTGCAACTCACC
AGTGCCCCAGATGGGTGGCAAGAACTGCAAGGGCAGCGGCCGGGAAACCAAACCCTGTCAGCGTGATCCG
TGCCCAATTGATGGCCGCTGGAGCCCCTGGTCCCCTTGGTCAGCCTGCACAGTTACCTGTGCTGGAGGGA
TCCGTGAGCGCTCACGTGTTTGCAACAGCCCTGAGCCCCAGTATGGAGGGAAGGACTGTGTCGGGGATGT
GACAGAACACCAAATGTGCAACAAGAGAAGCTGCCCTATTGATGGGTGCTTATCCAACCCGTGTTTTCCT
GGAGCCAAGTGCAACAGCTTCCCTGATGGGTCCTGGTCCTGTGGCTCCTGCCCAGTGGGCTTTCTGGGCA
ATGGTACCCACTGTGAGGACCTGGATGAGTGTGCTGTGGTCACAGATATTTGCTTCTCAACTAACAAAGC
TCCCCGCTGTGTCAACACCAACCCGGGCTTCCACTGCCTGCCTTGTCCACCACGCTACAAGGGGAACCAA
CCCTTCGGTGTTGGCCTGGAGGATGCTAGGACAGAAAAACAAGTGTGTGAGCCAGAGAATCCATGTAAGG
ACAAGACTCACAGCTGCCACAAGAATGCAGAGTGCATCTACCTGGGCCACTTTAGTGACCCCATGTACAA
GTGTGAGTGCCAGATTGGCTACGCAGGTGATGGGCTCATCTGCGGGGAGGACTCAGACCTGGATGGCTGG
CCCAACAACAACCTGGTGTGTGCTACTAATGCCACCTACCACTGCATCAAGGACAACTGCCCCAAACTGC
CAAATTCCGGGCAGGAGGATTTTGATAAGGATGGAATCGGAGATGCTTGTGACGAGGACGATGACAATGA
CGGTGTGAGCGATGAGAAGGACAATTGCCAGCTTCTCTTCAATCCCCGTCAATTAGACTATGACAAGGAT
GAGGTTGGAGACCGCTGTGACAACTGCCCCTATGTGCACAACCCAGCACAGATCGACACAGACAACAATG
GCGAGGGGGATGCCTGCTCTGTGGACATTGACGGAGACGATGTTTTCAATGAGCGAGACAATTGTCCATA
TGTCTACAACACTGACCAGAGAGATACGGATGGTGATGGCGTGGGTGACCACTGTGACAATTGTCCTCTG
ATGCACAACCCAGATCAGATCGATCAGGACAATGATCTCGTTGGAGACCAGTGTGACAACAATGAGGACA
TAGATGATGACGGCCACCAGAACAACCAAGACAACTGCCCATACATCTCCAACTCCAACCAGGCTGACCA
TGACAACGACGGCAAGGGCGATGCCTGCGACTCTGATGATGACAATGATGGTGTTCCAGATGACAGGGAC
AACTGTCGGCTTGTGTTCAACCCAGACCAGGAAGACTCGGACGGTGACGGCCGAGGTGACATTTGTAAAG
ATGACTTTGACAATGATAATGTCCCAGATATTGATGATGTGTGCCCTGAGAACAATGCCATCACTGAGAC
AGACTTCAGAAACTTCCAGATGGTCCCTCTGGATCCCAAGGGGACCACACAAATTGATCCCAACTGGGTA
ATTCGTCACCAAGGCAAAGAGCTGGTGCAGACAGCAAACTCAGACCCTGGCATCGCTGTAGGTTTCGACG
AGTTTGGGTCTGTGGACTTCAGTGGCACTTTCTATGTCAACACTGACCGGGATGATGACTACGCTGGCTT
TGTCTTTGGCTATCAGTCAAGCAGCCGCTTCTATGTGGTGATGTGGAAGCAGGTGACCCAGACCTACTGG
GAAGACAAGCCCAGTCGGGCTTACGGCTACTCTGGTGTGTCACTCAAAGTGGTAAACTCCACGACTGGTA
CTGGCGAGCACCTGAGGAATGCCCTGTGGCACACGGGAAACACAGAAGGCCAGGTCCGGACTCTATGGCA
TGACCCCAAAAACATTGGCTGGAAAGACTACACTGCCTACAGGTGGCACCTGATTCACAGGCCTAAGACA
GGCTACATGAGAGTCTTAGTGCATGAAGGAAAGCAAGTCATGGCTGACTCAGGACCAATTTATGACCAAA
CCTACGCTGGTGGACGGCTGGGCCTGTTTGTCTTCTCCCAAGAGATGGTCTATTTCTCGGACCTCAAGTA
TGAGTGCAGAGATGCCTAG

Translation (1172 aa):
MLWALALLALGIGPRASAGDHVKDTSFDLFSISNINRKTIGAKQFRGPDPGVPAYRFVRFDYIPPVNTDD
LNRIVKLARRKEGFFLTAQLKQDRKSRGTLLVLEGPGTSQRQFEIVSNGPGDTLDLNYWVEGNQHTNFLE
DVGLADSQWKNVTVQVASDTYSLYVGCDLIDSVTLEEPFYEQLEVDRSRMYVAKGASRESHFRGLLQNVH
LVFADSVEDILSKKGCQHSQGAEVNTISEHTETLHLSPHITTDLVVQGVEKAQEVCTHSCEELSNMMNEL
SGLHVMVNQLSKNLERVSSDNQFLLELIGGPLKTRNMSACVQEGRIFAENETWVVDSCTTCTCKKFKTVC
HQITCSPATCANPSFVEGECCPSCSHSADSDEGWSPWAEWTECSVTCGSGTQQRGRSCDVTSNTCLGPSI
QTRTCSLGKCDTRIRQNGGWSHWSPWSSCSVTCGVGNVTRIRLCNSPVPQMGGKNCKGSGRETKPCQRDP
CPIDGRWSPWSPWSACTVTCAGGIRERSRVCNSPEPQYGGKDCVGDVTEHQMCNKRSCPIDGCLSNPCFP
GAKCNSFPDGSWSCGSCPVGFLGNGTHCEDLDECAVVTDICFSTNKAPRCVNTNPGFHCLPCPPRYKGNQ
PFGVGLEDARTEKQVCEPENPCKDKTHSCHKNAECIYLGHFSDPMYKCECQIGYAGDGLICGEDSDLDGW
PNNNLVCATNATYHCIKDNCPKLPNSGQEDFDKDGIGDACDEDDDNDGVSDEKDNCQLLFNPRQLDYDKD
EVGDRCDNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQRDTDGDGVGDHCDNCPL
MHNPDQIDQDNDLVGDQCDNNEDIDDDGHQNNQDNCPYISNSNQADHDNDGKGDACDSDDDNDGVPDDRD
NCRLVFNPDQEDSDGDGRGDICKDDFDNDNVPDIDDVCPENNAITETDFRNFQMVPLDPKGTTQIDPNWV
IRHQGKELVQTANSDPGIAVGFDEFGSVDFSGTFYVNTDRDDDYAGFVFGYQSSSRFYVVMWKQVTQTYW
EDKPSRAYGYSGVSLKVVNSTTGTGEHLRNALWHTGNTEGQVRTLWHDPKNIGWKDYTAYRWHLIHRPKT
GYMRVLVHEGKQVMADSGPIYDQTYAGGRLGLFVFSQEMVYFSDLKYECRDA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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