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Report for CCDS22438.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22438.1 Public Mus musculus 8 Abce1 23 108 98 CCDS HistoryNCBI Gene:24015Re-query CCDS DB by CCDS ID:22438.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22438.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080536.7 ENSMUSP00000079379.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080536.7Link to Ensembl Protein Viewer:ENSMUSP00000079379.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000080536Re-query CCDS DB by Protein ID:ENSMUSP00000079379
Original member Current member NCBI NM_015751.2 NP_056566.2 Accepted alive Link to Nucleotide Sequence:NM_015751.2Link to Protein Sequence:NP_056566.2Re-query CCDS DB by Nucleotide ID:NM_015751Re-query CCDS DB by Protein ID:NP_056566Link to BLAST:NP_056566.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056566.2 599 P61222 599 100% 0 0

Chromosomal Locations for CCDS 22438.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 79685230 79685277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79685945 79686056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79687441 79687563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79687664 79687806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79687895 79688005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79689125 79689183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79689308 79689367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79690237 79690458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79693424 79693545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79699347 79699436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79700586 79700682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79700913 79700982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79701115 79701252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79701774 79701891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79703004 79703101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79707234 79707319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79708423 79708525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1800 nt):
ATGGCAGACAAATTAACAAGAATTGCTATTGTCAACCACGACAAATGCAAACCTAAGAAATGTCGACAGG
AGTGCAAAAAGAGTTGCCCTGTGGTTCGGATGGGAAAATTGTGCATAGAAGTTACACCCCAGAGCAAAAT
AGCATGGATTTCTGAAACTCTCTGTATTGGTTGTGGTATTTGTATTAAGAAATGTCCCTTTGGCGCCTTA
TCAATTGTCAATTTGCCAAGCAACTTGGAAAAAGAAACAACACATCGCTACTGTGCCAATGCCTTCAAGC
TTCACAGGTTGCCTATCCCTCGTCCAGGTGAAGTTTTGGGATTAGTTGGAACTAATGGTATTGGAAAGTC
AACTGCACTAAAAATTTTAGCAGGAAAACAAAAGCCAAACCTTGGAAAGTATGATGATCCACCTGATTGG
CAAGAGATTTTGACTTATTTCCGTGGATCTGAATTACAAAATTACTTTACCAAGATTCTCGAAGATGACC
TAAAAGCCATTATCAAACCTCAATATGTAGACCAAATTCCCAAGGCTGCAAAGGGGACAGTGGGCTCTAT
TCTGGACCGAAAAGATGAAACAAAGACACAGGCAATTGTATGTCAGCAGCTTGATTTAACTCACCTTAAA
GAACGAAATGTCGAAGATCTTTCAGGAGGAGAGTTGCAGAGATTTGCTTGTGCTGTCGTTTGCATACAAA
AGGCTGATATTTTTATGTTTGATGAACCTTCTAGTTACCTCGATGTCAAGCAACGTTTAAAGGCTGCCAT
TACGATTCGATCTCTAATAAATCCAGATAGATATATCATTGTGGTGGAGCATGATCTAAGTGTATTAGAC
TATCTCTCTGACTTCATCTGCTGTCTATATGGGGTACCGAGTGCTTATGGTGTTGTCACGATGCCTTTTA
GTGTAAGAGAAGGCATAAATATATTTTTGGATGGCTATGTTCCAACAGAGAACCTGAGGTTCAGGGATGC
GTCGCTTGTTTTTAAGGTAGCTGAGACAGCAAATGAAGAAGAAGTTAAAAAGATGTGCATGTATAAATAT
CCCGGGATGAAGAAAAAGATGGGAGAGTTCGAGCTAGCAATTGTAGCTGGAGAGTTCACGGACTCTGAGA
TCATGGTGATGCTGGGGGAGAATGGTACAGGTAAAACTACATTTATCAGAATGCTTGCTGGAAGGCTTAA
ACCAGATGAAGGAGGAGAAGTGCCAGTTCTAAATGTCAGTTATAAGCCACAGAAAATCAGTCCCAAATCA
ACAGGAAGTGTTCGCCAGTTACTGCATGAAAAGATCAGAGATGCTTACACGCATCCGCAGTTTGTGACTG
ATGTAATGAAGCCCCTACAGATTGAAAACATCATTGACCAAGAGGTACAGACATTGTCTGGTGGTGAACT
TCAGCGAGTAGCTTTAGCTCTTTGTTTGGGCAAACCTGCTGACGTCTATTTGATTGATGAACCTTCTGCA
TATTTGGATTCTGAGCAAAGATTAATGGCAGCTCGGGTCGTCAAACGTTTCATTCTCCATGCAAAGAAGA
CAGCTTTTGTTGTAGAACATGACTTCATCATGGCCACCTATCTAGCAGATCGCGTCATCGTTTTTGATGG
TGTTCCATCAAAGAACACAGTTGCAAACAGTCCTCAGACTCTTTTGGCTGGCATGAACAAATTTTTGTCT
CAGCTCGAAATTACATTCAGAAGAGACCCCAACAACTACAGGCCACGAATAAATAAGCTCAATTCAATCA
AGGATGTAGAACAAAAGAAGAGTGGAAACTACTTTTTCTTGGATGATTAG

Translation (599 aa):
MADKLTRIAIVNHDKCKPKKCRQECKKSCPVVRMGKLCIEVTPQSKIAWISETLCIGCGICIKKCPFGAL
SIVNLPSNLEKETTHRYCANAFKLHRLPIPRPGEVLGLVGTNGIGKSTALKILAGKQKPNLGKYDDPPDW
QEILTYFRGSELQNYFTKILEDDLKAIIKPQYVDQIPKAAKGTVGSILDRKDETKTQAIVCQQLDLTHLK
ERNVEDLSGGELQRFACAVVCIQKADIFMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLD
YLSDFICCLYGVPSAYGVVTMPFSVREGINIFLDGYVPTENLRFRDASLVFKVAETANEEEVKKMCMYKY
PGMKKKMGEFELAIVAGEFTDSEIMVMLGENGTGKTTFIRMLAGRLKPDEGGEVPVLNVSYKPQKISPKS
TGSVRQLLHEKIRDAYTHPQFVTDVMKPLQIENIIDQEVQTLSGGELQRVALALCLGKPADVYLIDEPSA
YLDSEQRLMAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIVFDGVPSKNTVANSPQTLLAGMNKFLS
QLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNYFFLDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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