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Report for CCDS35595.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35595.1 Public Mus musculus 1 Dytn 23 108 98 CCDS HistoryNCBI Gene:241073Re-query CCDS DB by CCDS ID:35595.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 35595.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090313.4 ENSMUSP00000087787.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090313.4Link to Ensembl Protein Viewer:ENSMUSP00000087787.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000090313Re-query CCDS DB by Protein ID:ENSMUSP00000087787
Original member Current member NCBI NM_001081658.1 NP_001075127.1 Accepted alive Link to Nucleotide Sequence:NM_001081658.1Link to Protein Sequence:NP_001075127.1Re-query CCDS DB by Nucleotide ID:NM_001081658Re-query CCDS DB by Protein ID:NP_001075127Link to BLAST:NP_001075127.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001075127.1 653 A2CI98 653 100% 0 0

Chromosomal Locations for CCDS 35595.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 63623015 63623151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63633418 63633898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63641055 63641214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63643303 63643373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63647397 63647532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63658870 63659015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63661139 63661250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63664400 63664563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63664773 63664844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63674856 63674956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63675738 63675823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63677117 63677318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63678781 63678855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 63685101 63685119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1962 nt):
ATGGACCCAAGTAAACAAGGTACTCTTAATAGAGTTGAGAATTCTGTCTATAGAACAGCCTTCAAATTAC
GATCTGTGCAAACTCTTTGCCAATTGGACTTGATGGACAGCTTCCTGATTCAGCAGGTTCTATGGCGTGG
ACGTTCTGGGGAGAGCACAGAGACCTCCATTTCTGTGCAGCAGCTTTTTCAGGAGCTCCGGGAGCTGTTT
CAGCGCACTGGGATGGGAAATGCAGCCCAAGTGCACCCAAGAGCACCGGAGCTCACCCTGAGTCTTCTCA
TGGCCATGTTTGACAGAACAGGATCAGGTATTCTTAAACGTCAACCTGTGGCTGCTGCACTGGTTGCCCT
CTCGGGGGACAGCCCTCTTACAAAGTACAGAGCTTTTTTCCAGCTCTATGCGGAAAAGAACAGGAGAGGC
GATGATTCCCAAGCCCGCATGACCCGAAGAGTTTTGAGAGCCTTACTAACAGATCTACAGCAGATCCCGA
CTGTCGTGGGAGAGAGCTACACGTTGCGTCCCGTGGAAAGTGCTATCCACAGCTGCTTCCGAGGGGTGTT
GAGCTCTGGAATCAAGGAAGAGAAATTTCTGTCTTGGGCACAGTCTGAGCCTCTGGTCCTCTTGTGGCTC
CCAACTTGCTACCGCCTGTCAGCCGCGGAAACAGTCACTCACCCTGTGCGGTGCAGTGTCTGCAGAACCT
TCCCGATCATAGGACTGAGATACCATTGTCTAAAGTGCCTGGACTTTGACATCTGTGAGCTGTGTTTCTT
ATCTGGTCTCCACAAAAATTCCCACGAGAAGTCACACACTGTGATGGAGGAATGTGTCCAGATGTCAGCA
ACAGAGAATACAAAACTCCTCTTCAGGAGTCTCAGAAACAACCTGCCTCAGAAACGCCAGAGGGTAGGAG
CTGTGGGGAGACAGTGGCTGCTGGACCAGCTGGCTTCAAGGGACTCAGCTAGCCACGGGCCAGCCAGGCT
TTGCCTTCAGTATAAATGTCCTAAAGCCCCAGGGTATGCAAGCTCAAGAAGAGCAGTGGAAACAGCAGCC
ACCGGAGTCCTGTGTCAAAGGCCATCGCCTGCTCTGCAAGGGAATCACAACCGGCATGGCCAGACCATAG
TCAACATTAAGAATGAGCTGTGGAGGACTCGTGACTCTCTCAACACTCTGCTCAGGGAAAGAAGGCTCCT
TAGGAAACAGTTACATAGGTACAAGCAGAAATTGCAAGGCACATATGCCTTACAGGAAGAACAGAACTGC
AGATTTGAAACAAAGATTCGGGAGCTCACAACCAACCAAGATAACCTATGGACCAAGCTACAGCAGATGA
GACGAGACCTACAGGCAATGTTGCAGCCACTCCATCCTTCTTCTTCTCCTCAAACCACAGCATCCAAGAT
TTTCCATTCTTTACCAGATGATGGCATACGGAGAGGAGGTGACTCTTCCCACATCAAGAGGGTCACTAGG
GATGGTCCAGAATGGGAACTGCTTCCTAACTCTGCCAAGGTGGACAGAAAGCACAAATGTCAAGCAAGTT
CAGGGAAAGCTCTACCAGACTCTGAACCACAAGAGATCATTTTGCAAAGCACTAGGAAACAAAATCACCC
ACAAAAGATGCTGAGCAAAGTCCATAGTTCCCCATCTGCTCACCAGCAGGACACTCTCCAGATTCCTCCT
ACTGAAGTAAAGATCCCTGCTCAAACACTTTCAGCAGGGAAAGAGATGGAGAGCTGCAGTGAAAAGAGGA
ACAACCTGGAAGATGAGGAGCTACAAGCACTGTTGCCCCGACTCCTGGATGCCTTTGACCTAGACTCGCC
AACAGGTCTGCAGCCTTTGATGGACATGGAGCTGTATGGTAGAGCCCAGCAGGTGTGCAGGGCCTTCTCT
GTCCTTGTGGATCAAATCACCTTGCCCACTTGGAGTGAAGAAGAATCCAGACTCAAAGGCCCCTTGGTGT
GA

Translation (653 aa):
MDPSKQGTLNRVENSVYRTAFKLRSVQTLCQLDLMDSFLIQQVLWRGRSGESTETSISVQQLFQELRELF
QRTGMGNAAQVHPRAPELTLSLLMAMFDRTGSGILKRQPVAAALVALSGDSPLTKYRAFFQLYAEKNRRG
DDSQARMTRRVLRALLTDLQQIPTVVGESYTLRPVESAIHSCFRGVLSSGIKEEKFLSWAQSEPLVLLWL
PTCYRLSAAETVTHPVRCSVCRTFPIIGLRYHCLKCLDFDICELCFLSGLHKNSHEKSHTVMEECVQMSA
TENTKLLFRSLRNNLPQKRQRVGAVGRQWLLDQLASRDSASHGPARLCLQYKCPKAPGYASSRRAVETAA
TGVLCQRPSPALQGNHNRHGQTIVNIKNELWRTRDSLNTLLRERRLLRKQLHRYKQKLQGTYALQEEQNC
RFETKIRELTTNQDNLWTKLQQMRRDLQAMLQPLHPSSSPQTTASKIFHSLPDDGIRRGGDSSHIKRVTR
DGPEWELLPNSAKVDRKHKCQASSGKALPDSEPQEIILQSTRKQNHPQKMLSKVHSSPSAHQQDTLQIPP
TEVKIPAQTLSAGKEMESCSEKRNNLEDEELQALLPRLLDAFDLDSPTGLQPLMDMELYGRAQQVCRAFS
VLVDQITLPTWSEEESRLKGPLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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