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Report for CCDS18444.3 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
18444.3 |
Public |
Mus musculus |
4 |
Slc1a7 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:242607](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:18444.3](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 4 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 18444.2 |
The coding region has been updated to extend the N-terminus due to the presence of an upstream in-frame AUG. The update changes the protein length from 559 aa to 569 aa, but the splice sites are unaffected. The extension would be specific to mouse and rat. The uAUG has a moderately weak Kozak signal, which means that the more conserved downstream ATG might also be used due to leaky scanning. |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)
Attributes |
CDS uses downstream AUG |
Sequence IDs included in CCDS 18444.3
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000106713.4 |
ENSMUSP00000102324.4 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000106713.4](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000102324.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000106713](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000102324](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_146255.3 |
NP_666367.3 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_146255.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_666367.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_146255](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_666367](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_666367.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_666367.3 |
559 |
Q8JZR4 |
559 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 18444.3
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1680 nt): ATGGTGCTCGACGCTGTCCTGGCTCGAGGGCGCACAGTGTGTAAGCACAACGGGCTGCTCATCCTGTCTG TGCTCTCTGTCATCGTGGGCTGCCTCCTTGGCTTCTTCCTCAGGACCCAGCGCCTCTCACCACAGGAGAT TAGTTACTTCCAGTTCCCTGGAGAACTCTTGATGCGGATGCTGAAGATGCTGATCCTACCACTGGTGGTC TCCAGCTTGATGTCCGGCCTTGCCTCCCTGGATGCCAAGACCTCCAGCCGCTTGGGGATCCTCACCGTGG CATACTACCTGTGGACTACCTTTCTGGCTGTTGTTGTGGGCATCATCATGGTCTCCATCATCCACCCTGG TGGTGCAGCACAGAAGGAGACAACTGAACAGAGTGGAAAGCCGGTCATGAGCTCAGCTGATGCCCTCCTG GATCTTGTCCGGAACATGTTCCCAGCCAACCTGGTAGAAGCCACGTTCAAACAGTACCGCACCAAGACCA CCCCAGTTATCAAGTCTCCCAGGGGAGCAGCGGAGGAGGCTCCCCGGCGGATCGTCATCTATGGGGTCCA GGAAGACAATGGCTCACGTGTGCAGAACTTTGCCCTGGATCTGACGCCCCCACCTGAGATTGTCTACAAG TCAGAGCCTGGTACCAGTGATGGCATGAACGTGCTAGGCATTGTCATCTTCTCAGCCACGATGGGTATCA TGCTGGGCCGCATGGGTGACAGCGGGACGCCCCTGGTCAGCTTCTGTCAGTGCCTTAATGAGTCTGTCAT GAAGATCGTGGCAGTGGCAGGGTGGTACTTTCCCTTTGGCATTGTCTTCCTGATCGCTGGCAAGATCTTG GAGATGGATGACCCCAAGGCAGTGGGGAAAAAGCTGGGCTTCTACGCCGTGACTGTGGTTTGTGGGCTGG TGGTCCACGGTCTCCTCATCCTGCCCCTACTGTACTTCCTCATCACCAAGAAGAACCCCATCGTCTTCAT CCGAGGCGTCCTCCAGGCTCTGCTCATTGCGTTGGCCACCTCCTCCAGCTCAGCCACACTGCCCATCACC TTCAAGTGCCTGCTGGAGAACAACCATATCGACCGCCGCATCGCTCGCTTCGTGCTGCCTGTGGGCGCCA CCATCAACATGGATGGCACCGCGCTCTACGAGGCCGTGGCTGCCATCTTTATCGCCCAGGTCAACAACTA TGAGCTAGACTTTGGACAGATCATCACTATCAGCATCACGGCCACGGCAGCCAGCATTGGGGCGGCTGGC ATCCCCCAGGCGGGGCTCGTCACCATGGTCATCGTGCTCACCTCTGTGGGACTGCCGACCGATGACATCA ACCTCATCATAGCTGTAGACTGGGCACTGGATCGCTTCCGAACCATGATTAATGTGCTGGGTGATGCACT GGCGGCAGGGATCATGGCCCACATCTGCCGGAAGGATTTTGCTCAGGACATGGGCACTGAGAAATTGCTA CCCTGTGAGACCAAGCCAGTGACACTGCAGGAGATCGTGGCTGCCCAGCAGAATGGCTGTGTGAAGAGTG TGGCTGAGGCCTCAGAGCTAACCCTGGGCCCCACGTGCCCCCACCACATCCCAGTCCAGGTAGAGCAGGA TGAGGATCCAGCCGCTGCCAGCCTAGACCACTGTACTATTGAGATCAGTGAGCTAGAGACCAACGTGTGA
Translation (559 aa): MVLDAVLARGRTVCKHNGLLILSVLSVIVGCLLGFFLRTQRLSPQEISYFQFPGELLMRMLKMLILPLVV SSLMSGLASLDAKTSSRLGILTVAYYLWTTFLAVVVGIIMVSIIHPGGAAQKETTEQSGKPVMSSADALL DLVRNMFPANLVEATFKQYRTKTTPVIKSPRGAAEEAPRRIVIYGVQEDNGSRVQNFALDLTPPPEIVYK SEPGTSDGMNVLGIVIFSATMGIMLGRMGDSGTPLVSFCQCLNESVMKIVAVAGWYFPFGIVFLIAGKIL EMDDPKAVGKKLGFYAVTVVCGLVVHGLLILPLLYFLITKKNPIVFIRGVLQALLIALATSSSSATLPIT FKCLLENNHIDRRIARFVLPVGATINMDGTALYEAVAAIFIAQVNNYELDFGQIITISITATAASIGAAG IPQAGLVTMVIVLTSVGLPTDDINLIIAVDWALDRFRTMINVLGDALAAGIMAHICRKDFAQDMGTEKLL PCETKPVTLQEIVAAQQNGCVKSVAEASELTLGPTCPHHIPVQVEQDEDPAAASLDHCTIEISELETNV
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