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Report for CCDS18444.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18444.3 Public Mus musculus 4 Slc1a7 23 108 98 CCDS HistoryNCBI Gene:242607Re-query CCDS DB by CCDS ID:18444.3See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 18444.2
The coding region has been updated to extend the N-terminus due to the presence of an upstream in-frame AUG. The update changes the protein length from 559 aa to 569 aa, but the splice sites are unaffected. The extension would be specific to mouse and rat. The uAUG has a moderately weak Kozak signal, which means that the more conserved downstream ATG might also be used due to leaky scanning.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 18444.3

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106713.4 ENSMUSP00000102324.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106713.4Link to Ensembl Protein Viewer:ENSMUSP00000102324.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000106713Re-query CCDS DB by Protein ID:ENSMUSP00000102324
Original member Current member NCBI NM_146255.3 NP_666367.3 Accepted alive Link to Nucleotide Sequence:NM_146255.3Link to Protein Sequence:NP_666367.3Re-query CCDS DB by Nucleotide ID:NM_146255Re-query CCDS DB by Protein ID:NP_666367Link to BLAST:NP_666367.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666367.3 559 Q8JZR4 559 100% 0 0

Chromosomal Locations for CCDS 18444.3

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 107968576 107968710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107977604 107977683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107992939 107993154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108002177 108002219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108004270 108004489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108007490 108007589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108008141 108008374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108009679 108009873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108010370 108010504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108010893 108010995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108012231 108012449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1680 nt):
ATGGTGCTCGACGCTGTCCTGGCTCGAGGGCGCACAGTGTGTAAGCACAACGGGCTGCTCATCCTGTCTG
TGCTCTCTGTCATCGTGGGCTGCCTCCTTGGCTTCTTCCTCAGGACCCAGCGCCTCTCACCACAGGAGAT
TAGTTACTTCCAGTTCCCTGGAGAACTCTTGATGCGGATGCTGAAGATGCTGATCCTACCACTGGTGGTC
TCCAGCTTGATGTCCGGCCTTGCCTCCCTGGATGCCAAGACCTCCAGCCGCTTGGGGATCCTCACCGTGG
CATACTACCTGTGGACTACCTTTCTGGCTGTTGTTGTGGGCATCATCATGGTCTCCATCATCCACCCTGG
TGGTGCAGCACAGAAGGAGACAACTGAACAGAGTGGAAAGCCGGTCATGAGCTCAGCTGATGCCCTCCTG
GATCTTGTCCGGAACATGTTCCCAGCCAACCTGGTAGAAGCCACGTTCAAACAGTACCGCACCAAGACCA
CCCCAGTTATCAAGTCTCCCAGGGGAGCAGCGGAGGAGGCTCCCCGGCGGATCGTCATCTATGGGGTCCA
GGAAGACAATGGCTCACGTGTGCAGAACTTTGCCCTGGATCTGACGCCCCCACCTGAGATTGTCTACAAG
TCAGAGCCTGGTACCAGTGATGGCATGAACGTGCTAGGCATTGTCATCTTCTCAGCCACGATGGGTATCA
TGCTGGGCCGCATGGGTGACAGCGGGACGCCCCTGGTCAGCTTCTGTCAGTGCCTTAATGAGTCTGTCAT
GAAGATCGTGGCAGTGGCAGGGTGGTACTTTCCCTTTGGCATTGTCTTCCTGATCGCTGGCAAGATCTTG
GAGATGGATGACCCCAAGGCAGTGGGGAAAAAGCTGGGCTTCTACGCCGTGACTGTGGTTTGTGGGCTGG
TGGTCCACGGTCTCCTCATCCTGCCCCTACTGTACTTCCTCATCACCAAGAAGAACCCCATCGTCTTCAT
CCGAGGCGTCCTCCAGGCTCTGCTCATTGCGTTGGCCACCTCCTCCAGCTCAGCCACACTGCCCATCACC
TTCAAGTGCCTGCTGGAGAACAACCATATCGACCGCCGCATCGCTCGCTTCGTGCTGCCTGTGGGCGCCA
CCATCAACATGGATGGCACCGCGCTCTACGAGGCCGTGGCTGCCATCTTTATCGCCCAGGTCAACAACTA
TGAGCTAGACTTTGGACAGATCATCACTATCAGCATCACGGCCACGGCAGCCAGCATTGGGGCGGCTGGC
ATCCCCCAGGCGGGGCTCGTCACCATGGTCATCGTGCTCACCTCTGTGGGACTGCCGACCGATGACATCA
ACCTCATCATAGCTGTAGACTGGGCACTGGATCGCTTCCGAACCATGATTAATGTGCTGGGTGATGCACT
GGCGGCAGGGATCATGGCCCACATCTGCCGGAAGGATTTTGCTCAGGACATGGGCACTGAGAAATTGCTA
CCCTGTGAGACCAAGCCAGTGACACTGCAGGAGATCGTGGCTGCCCAGCAGAATGGCTGTGTGAAGAGTG
TGGCTGAGGCCTCAGAGCTAACCCTGGGCCCCACGTGCCCCCACCACATCCCAGTCCAGGTAGAGCAGGA
TGAGGATCCAGCCGCTGCCAGCCTAGACCACTGTACTATTGAGATCAGTGAGCTAGAGACCAACGTGTGA

Translation (559 aa):
MVLDAVLARGRTVCKHNGLLILSVLSVIVGCLLGFFLRTQRLSPQEISYFQFPGELLMRMLKMLILPLVV
SSLMSGLASLDAKTSSRLGILTVAYYLWTTFLAVVVGIIMVSIIHPGGAAQKETTEQSGKPVMSSADALL
DLVRNMFPANLVEATFKQYRTKTTPVIKSPRGAAEEAPRRIVIYGVQEDNGSRVQNFALDLTPPPEIVYK
SEPGTSDGMNVLGIVIFSATMGIMLGRMGDSGTPLVSFCQCLNESVMKIVAVAGWYFPFGIVFLIAGKIL
EMDDPKAVGKKLGFYAVTVVCGLVVHGLLILPLLYFLITKKNPIVFIRGVLQALLIALATSSSSATLPIT
FKCLLENNHIDRRIARFVLPVGATINMDGTALYEAVAAIFIAQVNNYELDFGQIITISITATAASIGAAG
IPQAGLVTMVIVLTSVGLPTDDINLIIAVDWALDRFRTMINVLGDALAAGIMAHICRKDFAQDMGTEKLL
PCETKPVTLQEIVAAQQNGCVKSVAEASELTLGPTCPHHIPVQVEQDEDPAAASLDHCTIEISELETNV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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