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Report for CCDS39511.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39511.1 Public Mus musculus 6 Atoh8 23 108 98 CCDS HistoryNCBI Gene:71093Re-query CCDS DB by CCDS ID:39511.1Re-query CCDS DB by GeneID:71093See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39511.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042646.7 ENSMUSP00000036981.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042646.7Link to Ensembl Protein Viewer:ENSMUSP00000036981.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000042646Re-query CCDS DB by Protein ID:ENSMUSP00000036981
Original member Current member NCBI NM_153778.3 NP_722473.1 Accepted alive Link to Nucleotide Sequence:NM_153778.3Link to Protein Sequence:NP_722473.1Re-query CCDS DB by Nucleotide ID:NM_153778Re-query CCDS DB by Protein ID:NP_722473Link to BLAST:NP_722473.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_722473.1 322 Q99NA2 322 100% 0 0

Chromosomal Locations for CCDS 39511.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 72207150 72207155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72223742 72223933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72234394 72235164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (969 nt):
ATGAAGCACATCCCGGTCCTCGAGGACGGGCCGTGGAAGACTGTGTGCGTTAAAGAACTGAACGGCCTCA
AGAAGCTCAAGCGGAAAGGCAAGGAGCCGGTGCGGCGCGCGAATGGCTATAAAACTTTCCGATTGGACTT
GGAAGCTCCCGAGCTCGGCGCCACAGTCAGCACCACCGCCGCCACCAACGGGCTTCGGGACAGGACACAA
CCGTTCCCGATCGCGACCCCAGTACCAGCCTCAGTGGCGCCGGCGGTTCCTCCAGGTGGAGGCACAGACA
CAGCCAGGGAATTCCGGGGCATCAGAGCGCCTGAGGTCTCTGACGCGCGCAAACGCGGTTTCGCTCTGGG
CACAGTGGGACCGGGACTACCCACGCCACCGCCGCCTCCCGCATCTCAGAGCTTGGCACCCGGGGATCCC
GAGGCGCACTCCTTCCGCGAGCAGGCTCTGCGTCCCCGCATCTTGCTGTGCGCCCCTCCCGCGCGTCCCA
CACAATCCGCGCCTCTCGCACCCCCAGCGGCGCCACAAGAGTCCCCCGTGCGCCCTGCGCCCCCCACGCG
CCCGGGGGAAAGTTCCTACTCGTCAATTTCACACGTAATTTACAATAACCACCCGGATTCTTCCGCGTCG
CCTAGGAAACGGCCAGGCGAAGCGACCGCCGCCTCAACGGAGATCAAAGCCCTGCAGCAGACCCGGAGGC
TTCTGGCCAACGCCAGGGAGCGGACGCGGGTGCACACCATCAGCGCAGCCTTCGAGGCGCTGAGGAAGCA
GGTGCCGTGCTACTCCTATGGGCAGAAGCTCTCCAAACTGGCCATCCTGAGGATTGCCTGTAACTACATC
TTGTCCCTGGCACGGCTGGCTGACCTGGACTACAGTGCCGACCACAGCAACCTCAGCTTCTCCGAGTGTG
TGCAGCGCTGCACCCGCACCCTGCAGGCAGAAGGGCGAGCCAAGAAACGGAAGGAGTGA

Translation (322 aa):
MKHIPVLEDGPWKTVCVKELNGLKKLKRKGKEPVRRANGYKTFRLDLEAPELGATVSTTAATNGLRDRTQ
PFPIATPVPASVAPAVPPGGGTDTAREFRGIRAPEVSDARKRGFALGTVGPGLPTPPPPPASQSLAPGDP
EAHSFREQALRPRILLCAPPARPTQSAPLAPPAAPQESPVRPAPPTRPGESSYSSISHVIYNNHPDSSAS
PRKRPGEATAASTEIKALQQTRRLLANARERTRVHTISAAFEALRKQVPCYSYGQKLSKLAILRIACNYI
LSLARLADLDYSADHSNLSFSECVQRCTRTLQAEGRAKKRKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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