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Report for CCDS22209.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22209.1 Public Mus musculus 8 Erlin2 23 108 98 CCDS HistoryNCBI Gene:244373Re-query CCDS DB by CCDS ID:22209.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22209.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033873.8 ENSMUSP00000033873.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033873.8Link to Ensembl Protein Viewer:ENSMUSP00000033873.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000033873Re-query CCDS DB by Protein ID:ENSMUSP00000033873
Original member Current member NCBI NM_001364476.1 NP_001351405.1 Accepted alive Link to Nucleotide Sequence:NM_001364476.1Link to Protein Sequence:NP_001351405.1Re-query CCDS DB by Nucleotide ID:NM_001364476Re-query CCDS DB by Protein ID:NP_001351405Link to BLAST:NP_001351405.1
Original member NCBI NM_153592.2 NP_705820.1 Updated not alive Link to Nucleotide Sequence:NM_153592.2Link to Protein Sequence:NP_705820.1Re-query CCDS DB by Nucleotide ID:NM_153592Re-query CCDS DB by Protein ID:NP_705820
Current member NCBI NM_153592.3 NP_705820.1 Accepted alive Link to Nucleotide Sequence:NM_153592.3Link to Protein Sequence:NP_705820.1Re-query CCDS DB by Nucleotide ID:NM_153592Re-query CCDS DB by Protein ID:NP_705820Link to BLAST:NP_705820.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001351405.1 340 Q8BFZ9 340 100% 0 0
NP_705820.1 340 Q8BFZ9 340 100% 0 0

Chromosomal Locations for CCDS 22209.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 27025072 27025178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27027169 27027250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27028899 27028945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27029339 27029400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27029544 27029669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27031698 27031771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27031927 27031985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27032234 27032325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27033386 27033475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27036014 27036093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27036433 27036636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1023 nt):
ATGGCTCAGTTGGGAGCTGTTGTGGCCGTGGCTTCCAGTTTCTTTTGTGCATCTCTCTTCTCAGCTGTGC
ACAAGATAGAAGAGGGACATATTGGAGTATATTACAGAGGTGGTGCCCTGCTGACCTCCACCAGTGGCCC
GGGTTTCCATCTCATGCTCCCGTTCATCACATCCTATAAGTCTGTACAGACCACTCTCCAAACTGATGAA
GTGAAGAACGTACCATGTGGAACCAGTGGTGGTGTGATGATCTACTTTGACAGAATTGAAGTGGTGAACT
TCCTGGTCCCAAATGCAGTGTATGATATAGTGAAGAACTATACTGCAGACTATGACAAGGCCCTCATCTT
CAACAAGATCCATCATGAGCTTAACCAGTTCTGCAGCGTTCATACTCTTCAGGAAGTCTATATCGAGCTG
TTTGATCAAATTGATGAAAACCTCAAGTTGGCTTTGCAGCAGGACCTGACTTCCATGGCCCCTGGGCTGG
TTATCCAAGCTGTGCGAGTGACAAAGCCCAATATACCTGAGGCAATCCGCAGGAACTATGAGCTGATGGA
AAGCGAGAAGACGAAGCTTCTCATTGCAGCCCAGAAGCAGAAGGTGGTGGAAAAGGAGGCAGAAACAGAG
AGGAAGAAGGCCCTCATTGAGGCAGAAAAAGTGGCACAGGTTGCAGAAATCACCTATGGGCAAAAGGTGA
TGGAGAAGGAGACAGAGAAGAAGATCTCAGAAATTGAAGATGCTGCGTTCCTGGCCCGGGAGAAGGCGAA
GGCCGACGCTGAGTGCTACACAGCGCTGAAGATCGCAGAAGCAAATAAGCTCAAGCTGACTCCAGAATAC
CTGCAGCTGATGAAGTACAAGGCCATTGCTTCCAACAGCAAGATTTACTTCGGCAAAGACATCCCCAACA
TGTTTATGGATTCCGCAGGGGGGCTGGGCAAGCAGTTTGAGGGGCTGAGCGACGACAAGCTGGGCTTTGG
CCTAGAAGATGAGCCCCTCGAGGCACCCACAAAGGAGAACTGA

Translation (340 aa):
MAQLGAVVAVASSFFCASLFSAVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTTLQTDE
VKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKIHHELNQFCSVHTLQEVYIEL
FDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYELMESEKTKLLIAAQKQKVVEKEAETE
RKKALIEAEKVAQVAEITYGQKVMEKETEKKISEIEDAAFLAREKAKADAECYTALKIAEANKLKLTPEY
LQLMKYKAIASNSKIYFGKDIPNMFMDSAGGLGKQFEGLSDDKLGFGLEDEPLEAPTKEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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