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Report for CCDS24709.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24709.1 Public Mus musculus 11 Slc36a2 23 108 98 CCDS HistoryNCBI Gene:246049Re-query CCDS DB by CCDS ID:24709.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24709.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039305.5 ENSMUSP00000045613.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039305.5Link to Ensembl Protein Viewer:ENSMUSP00000045613.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000039305Re-query CCDS DB by Protein ID:ENSMUSP00000045613
Original member Current member NCBI NM_153170.3 NP_694810.2 Accepted alive Link to Nucleotide Sequence:NM_153170.3Link to Protein Sequence:NP_694810.2Re-query CCDS DB by Nucleotide ID:NM_153170Re-query CCDS DB by Protein ID:NP_694810Link to BLAST:NP_694810.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694810.2 478 Q8BHK3-1 478 100% 0 0

Chromosomal Locations for CCDS 24709.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 55159344 55159615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55162646 55162815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55164233 55164399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55168830 55168928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55169854 55170072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55174668 55174752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55179325 55179420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55180707 55180795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55181545 55181635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55184811 55184959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1437 nt):
ATGTCTGTGACCAAGAGTGCCAGGAGTCCGCAGGTAGCCACCCCTCTCAATCTGGACCTTCCTGAGAGTG
CCAAGAAGCTGCAGAGCCAGGATCCCAGTCCAGCGAATGGGAGCTCTTCAGAGTCATCAAAGAAGACCAA
GGGCATAACCGGGTTCCAGACATTGGTTCATCTGGTCAAAGGCAACATGGGCACAGGGATCCTCGGACTT
CCCCTGGCTGTGAAGAATGCGGGCATCTTGATGGGCCCACTCAGCTTGCTGGTAATGGGCCTCATCGCCT
GCCACTGTATGCACATCCTAGTCAGATGTGCCCAGCGCTTCTGTCACAGACTGAACAAGCCTTTCATGGA
CTATGGGGACACAGTGATGCACGGACTGGCTTTCAGTCCCAATGCCTGGCTGCAAAACCACGCCCACTGG
GGGAGGCGTGTCGTGAGCTTCTTCCTCATCGTCACCCAGCTGGGTTTCTGCTGTGTGTACATTGTGTTTC
TGGCGGACAATTTAAAACAGGTAGTAGAAGCTGTTAACAGCACAACCATCAGCTGCCACAAGAACGAGAC
GGTAGTTCTGACGCCCACCATGGACTCTCGACTCTACATGCTCTCCTTCCTGCCCGTTCTGGGGCTTCTG
GTGTTCGTCAGGAACCTGCGTGTCCTCACCATCTTCTCCCTGCTGGCCAACATCAGCATGCTGGTCAGCC
TGGTCATCATTGCCCAGTACATCATCCAGGAAATTCCAGATGCCAGCCAGTTGCCACTGGTAGCAAGCTG
GAAGACCTACCCGCTCTTCTTTGGAACAGCCATTTTTTCATTTGAAAGCATCGGTGTGGTCCTGCCTCTG
GAAAACAAGATGAAGGATGCCCGCGGCTTCCCAACCATTCTGTCTTTGGGGATGTCCATCATCACCACCC
TGTACATTGCTATCGGGGCTCTGGGCTACCTGCGGTTTGGAGATGACATCAAAGCCAGCATCACTCTTAA
CCTGCCCAACTGCTGGCTGTACCAATCAGTCAAGCTCCTGTATGTCGTCGGTATCCTGTGTACCTATGCC
CTGCAGTTCTACGTCCCTGCGGAAATCATCATCCCCCTTGCTGTCTCTCAGGTGTCAAAACGCTGGGCAC
TGCCCGTGGACCTGTCTATCCGGCTTGCCCTGGTCTGCCTCACATGCATGCTGGCCATCCTCATCCCACG
CCTGGACCTGGTCCTCTCCCTGGTGGGCTCTGTGAGCAGCAGCGCCCTGGCCCTCATCATCCCGCCCCTG
CTGGAGGTGGTCACCTACTATGGAGAGGGCATTAGCCCCCTGACCGTCACCAAGGATGCCCTCATCAGCA
TCCTGGGCTTCATGGGCTTTGTGGTGGGGACCTACCAGGCCCTGGATGAGCTGATCAAGTCCGGGAACTC
TCCCGCCCTGTCCAACTCCACCATGTTTATTCAGTGA

Translation (478 aa):
MSVTKSARSPQVATPLNLDLPESAKKLQSQDPSPANGSSSESSKKTKGITGFQTLVHLVKGNMGTGILGL
PLAVKNAGILMGPLSLLVMGLIACHCMHILVRCAQRFCHRLNKPFMDYGDTVMHGLAFSPNAWLQNHAHW
GRRVVSFFLIVTQLGFCCVYIVFLADNLKQVVEAVNSTTISCHKNETVVLTPTMDSRLYMLSFLPVLGLL
VFVRNLRVLTIFSLLANISMLVSLVIIAQYIIQEIPDASQLPLVASWKTYPLFFGTAIFSFESIGVVLPL
ENKMKDARGFPTILSLGMSIITTLYIAIGALGYLRFGDDIKASITLNLPNCWLYQSVKLLYVVGILCTYA
LQFYVPAEIIIPLAVSQVSKRWALPVDLSIRLALVCLTCMLAILIPRLDLVLSLVGSVSSSALALIIPPL
LEVVTYYGEGISPLTVTKDALISILGFMGFVVGTYQALDELIKSGNSPALSNSTMFIQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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