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Report for CCDS17108.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17108.1 Public Mus musculus 2 Pard6b 23 108 98 CCDS HistoryNCBI Gene:58220Re-query CCDS DB by CCDS ID:17108.1Re-query CCDS DB by GeneID:58220See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17108.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052125.6 ENSMUSP00000052619.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052125.6Link to Ensembl Protein Viewer:ENSMUSP00000052619.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000052125Re-query CCDS DB by Protein ID:ENSMUSP00000052619
Original member Current member NCBI NM_021409.2 NP_067384.2 Accepted alive Link to Nucleotide Sequence:NM_021409.2Link to Protein Sequence:NP_067384.2Re-query CCDS DB by Nucleotide ID:NM_021409Re-query CCDS DB by Protein ID:NP_067384Link to BLAST:NP_067384.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067384.2 371 Q9JK83-1 371 100% 0 0

Chromosomal Locations for CCDS 17108.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 168081294 168081359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168087342 168087564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168098384 168099210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1116 nt):
ATGAACCGCGGCCACCGGCACGGGGCGAGCAGCGGCTGCCTGGGCACCATGGAGGTGAAGAGCAAGTTTG
GAGCTGAGTTTCGTCGGTTTTCACTGGAAAGATCTAAGCCTGGAAAATTTGAGGAGTTTTACGGACTGCT
GCAACATGTTCACAAGATCCCCAATGTCGACGTGTTGGTGGGCTACGCAGATATCCACGGGGACCTGCTG
CCTATAAATAATGATGACAACTACCACAAGGCGGTTTCCACCGCCAATCCACTGCTCAGGATTTTTATAC
AGAAGAAGGAAGAAGCTGACTACAGTGCCTTTGGCACCGACACCCTGATCAGGAAGAAGAACATGCTGAG
CAACGTGCTGCGTCCCGACAACCACCGGAAGAAGCCTCACATCGTCATCAGCATGCCGCAGGACTTCCGG
CCCGTGTCATCCATCATCGACGTGGACATCCTCCCAGAGACGCACCGGAGGGTCCGTCTGTACAAGTACG
GCACAGAGAAGCCGCTGGGCTTCTACATCCGGGATGGCTCCAGCGTCCGAGTGACACCGCACGGCTTGGA
GAAAGTCCCCGGCATCTTCATATCTCGGCTCGTCCCTGGGGGTCTGGCCCAGAGCACGGGCCTGCTAGCT
GTCAACGATGAGGTGTTAGAAGTCAACGGTATAGAAGTGTCCGGGAAGAGCCTGGACCAGGTGACTGACA
TGATGATAGCCAACAGCCGCAACCTCATCATCACCGTGCGCCCGGCCAACCAGAGGAACAACGTGGTGCG
CAACAGTCGGACTTCTGGCAGCTCCAGCCAGTCCACTGACAACAGCCTCCTGGGCTTCCCACAGCAGGTG
GAGGCCAGCTTCGAGCCCGAGGACCAGGACAGCGACGAGGACGACATCATCATTGAAGACAGTGGCGAGC
CGCAGCAGATCCCGAAGGCCACCCCCGCCCAGAGCCTGGAGTCCCTGACGCAGATCGAGCTCAGCTTTGA
GTCCGGACAGAACGGGTTCTCCCCTCCTCAGGACACGAGCCTGGTGCCTGTGCCCGGCAGCCTGGACACA
GAGCTGGAAAGCCGGGCTCCGGACCAGAAACTCTTAGAGGAAGATGGGACAATCATAACATTGTGA

Translation (371 aa):
MNRGHRHGASSGCLGTMEVKSKFGAEFRRFSLERSKPGKFEEFYGLLQHVHKIPNVDVLVGYADIHGDLL
PINNDDNYHKAVSTANPLLRIFIQKKEEADYSAFGTDTLIRKKNMLSNVLRPDNHRKKPHIVISMPQDFR
PVSSIIDVDILPETHRRVRLYKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLA
VNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQRNNVVRNSRTSGSSSQSTDNSLLGFPQQV
EASFEPEDQDSDEDDIIIEDSGEPQQIPKATPAQSLESLTQIELSFESGQNGFSPPQDTSLVPVPGSLDT
ELESRAPDQKLLEEDGTIITL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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