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Report for CCDS21504.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21504.1 Public Mus musculus 7 Plekhb1 23 108 98 CCDS HistoryNCBI Gene:27276Re-query CCDS DB by CCDS ID:21504.1Re-query CCDS DB by GeneID:27276See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21504.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079176.13 ENSMUSP00000078175.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079176.13Link to Ensembl Protein Viewer:ENSMUSP00000078175.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000079176Re-query CCDS DB by Protein ID:ENSMUSP00000078175
Original member Current member NCBI NM_013746.3 NP_038774.1 Accepted alive Link to Nucleotide Sequence:NM_013746.3Link to Protein Sequence:NP_038774.1Re-query CCDS DB by Nucleotide ID:NM_013746Re-query CCDS DB by Protein ID:NP_038774Link to BLAST:NP_038774.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038774.1 243 Q9QYE9-1 243 100% 0 0

Chromosomal Locations for CCDS 21504.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 100644933 100645069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100645570 100645669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100649928 100650032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100653654 100653693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100654602 100654704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100655249 100655401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100656735 100656810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100661919 100661936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (732 nt):
ATGAGCCCGGCAACCCCGGTTCCACCCGACTCCATCCTGGAAAGTCCTTTTGAAGAAATGGCCCTGGTGA
GGGGCGGCTGGCTGTGGAGACAGAGCTCCATCCTCCGCCGCTGGAAGCGGAATTGGTTCGCTCTGTGGTT
GGATGGCACACTGGGTTACTACCATGACGAGACGGCACAGGACGAGGAGGACCGAGTAGTCATCCACTTC
AATGTCCGAGACATAAAGGTCGGCCAAGAGTGTCAGGATGTGCAGCCCCCAGAGGGCAGGAGCCGAGATG
GCCTGCTGACAGTGAACCTGCGGGAGGGTTCCCGCCTGCACCTGTGCGCTGAGACCCGGGATGATGCCAT
AGCATGGAAGACTGCCCTGATGGAGGCAAATTCCACCCCGGCCCCAGCTGGAGCCACCGTCCCACCCAGG
AGCCGTCGGGTTTGCCCTAAGGTCAGGTGTACGACCCTCTCATGGAACCCCTGTAAGGTTGAGAGGCGGA
TCTGGGTACGCGTCTACAGCCCGTATCAGGACTACTATGAGGTGGTGCCACCCAACGCACATGAAGCCAC
ATATGTCCGCAGCTACTATGGGCCACCTTATGCAGGTCCTGGTGTGACACACGTGATAGTTCGAGAGGAC
CCCTGCTACAGCTCAGGCGCCCCTTTGGCCATGGGCATGCTTGCTGGGGCTGCCACGGGTGCTGCTCTTG
GTTCACTTATGTGGTCGCCTTGTTGGTTCTGA

Translation (243 aa):
MSPATPVPPDSILESPFEEMALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHF
NVRDIKVGQECQDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANSTPAPAGATVPPR
SRRVCPKVRCTTLSWNPCKVERRIWVRVYSPYQDYYEVVPPNAHEATYVRSYYGPPYAGPGVTHVIVRED
PCYSSGAPLAMGMLAGAATGAALGSLMWSPCWF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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