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Report for CCDS24564.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24564.1 Public Mus musculus 11 Ublcp1 23 108 98 CCDS HistoryNCBI Gene:79560Re-query CCDS DB by CCDS ID:24564.1Re-query CCDS DB by GeneID:79560See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24564.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102795.3 ENSMUSP00000099859.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102795.3Link to Ensembl Protein Viewer:ENSMUSP00000099859.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102795Re-query CCDS DB by Protein ID:ENSMUSP00000099859
Original member Current member NCBI NM_024475.5 NP_077795.2 Accepted alive Link to Nucleotide Sequence:NM_024475.5Link to Protein Sequence:NP_077795.2Re-query CCDS DB by Nucleotide ID:NM_024475Re-query CCDS DB by Protein ID:NP_077795Link to BLAST:NP_077795.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077795.2 318 Q8BGR9-1 318 100% 0 0

Chromosomal Locations for CCDS 24564.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 44455588 44455615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 44456364 44456491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 44458205 44458321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 44460721 44460819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 44461319 44461356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 44463658 44463756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 44465365 44465480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 44465558 44465643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 44465996 44466087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 44466815 44466968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGGCACTCCCCATCATAGTGAAATGGGGTGGGCAGGAGTACTCAGTGACCACGCTCTCAGAAGATGATA
CTGTGCTGGATCTTAAACAGTTCCTCAAGACCCTTACGGGAGTGCTCCCAGAACGCCAGAAGTTACTAGG
GCTCAAAGTTAAAGGCAAACCTGCAGAAAATGATGTTAAGCTTGGAGCTCTCAAACTGAAACCAAATACT
AAAATCATGATGATGGGAACTCGAGAGGAGAGCTTGGAAGATGTCTTATGTCCTCCTCCTGACAATGATG
ATGTCATCAATGATTTTGACATTGAAGATGAAGTAGTTGAAGTAGAAAATAGGGAGGAAAACCTCCTGAA
GGTCTCTCGCAGAGTCAAGGAGTACAAGGTGGAGGTGCTGAACCCTCCCCGGGAGGGCAAGAAGCTCCTG
GTGCTGGATGTTGACTATACACTGTTTGATCATAGGTCTTGTGCAGAGACTGGGGTAGAGCTAATGAGAC
CATATCTTCATGAATTTCTAACATCTGCATATGAAGATTATGACATTGTTATTTGGTCTGCAACAAATAT
GAAGTGGATTGAAGCTAAAATGAAAGAGCTGGGCGTGAGCACAAATGCCAACTATAAGATTACCTTCATG
CTGGACAGTGCGGCCATGATCACTGTGCACACGCCCCGGAGAGGGCTCATTGACGTGAAGCCTCTTGGTG
TCATTTGGGGAAAGTTTTCTGAATTCTACAGCAAAAAGAACACCATTATGTTTGATGATATAGGAAGAAA
TTTTCTAATGAATCCACAAAATGGACTGAAGATAAGGCCTTTCATGAAAGCTCATCTAAACCGTGATAAA
GACAAGGAACTGGTGAAGCTCACTCAGTACCTCAAGGAGATCGCTAAGCTTGATGACTTCTTGGAGCTGA
ATCACAAGTACTGGGAGAGGTATCTATCAAAGAAGCAAGGACAGTAG

Translation (318 aa):
MALPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNT
KIMMMGTREESLEDVLCPPPDNDDVINDFDIEDEVVEVENREENLLKVSRRVKEYKVEVLNPPREGKKLL
VLDVDYTLFDHRSCAETGVELMRPYLHEFLTSAYEDYDIVIWSATNMKWIEAKMKELGVSTNANYKITFM
LDSAAMITVHTPRRGLIDVKPLGVIWGKFSEFYSKKNTIMFDDIGRNFLMNPQNGLKIRPFMKAHLNRDK
DKELVKLTQYLKEIAKLDDFLELNHKYWERYLSKKQGQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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