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Report for CCDS43950.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43950.1 Public Homo sapiens X GAGE1 24 110 108 CCDS HistoryNCBI Gene:2543Re-query CCDS DB by CCDS ID:43950.1See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 43950.1
This CCDS representation is supported by the mRNA accession BC069470.1, which has its best hit to this GAGE family member.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 43950.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381700.11 ENSP00000371119.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381700.11Link to Ensembl Protein Viewer:ENSP00000371119.5Re-query CCDS DB by Nucleotide ID:ENST00000381700Re-query CCDS DB by Protein ID:ENSP00000371119
Original member Current member NCBI NM_001040663.4 NP_001035753.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001040663.4Link to Protein Sequence:NP_001035753.1Re-query CCDS DB by Nucleotide ID:NM_001040663Re-query CCDS DB by Protein ID:NP_001035753Link to BLAST:NP_001035753.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035753.1 117 P0DTW1 117 100% 0 0

Chromosomal Locations for CCDS 43950.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 49600175 49600258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49600724 49600844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49603668 49603793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49605993 49606015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (354 nt):
ATGAGTTGGCGAGGAAGATCGACCTATTATTGGCCTAGACCAAGGCGCTATGTACAGCCTCCTGAAATGA
TTGGGCCTATGCGGCCCGAGCAGTTCAGTGATGAAGTGGAACCAGCAACACCTGAAGAAGGGGAACCAGC
AACTCAACGTCAGGATCCTGCAGCTGCTCAGGAGGGAGAGGATGAGGGAGCATCTGCAGGTCAAGGGCCG
AAGCCTGAAGCTGATAGCCAGGAACAGGGTCACCCACAGACTGGGTGTGAGTGTGAAGATGGTCCTGATG
GGCAGGAGATGGACCCGCCAAATCCAGAGGAGGTGAAAACGCCTGAAGAAGGTGAAGGGCAATCACAGTG
TTAA

Translation (117 aa):
MSWRGRSTYYWPRPRRYVQPPEMIGPMRPEQFSDEVEPATPEEGEPATQRQDPAAAQEGEDEGASAGQGP
KPEADSQEQGHPQTGCECEDGPDGQEMDPPNPEEVKTPEEGEGQSQC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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