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Report for CCDS48472.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48472.1 Public Mus musculus 1 Ccdc121rt1 23 108 98 CCDS HistoryNCBI Gene:403180Re-query CCDS DB by CCDS ID:48472.1Re-query CCDS DB by GeneID:403180See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48472.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058825.4 ENSMUSP00000052294.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058825.4Link to Ensembl Protein Viewer:ENSMUSP00000052294.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000058825Re-query CCDS DB by Protein ID:ENSMUSP00000052294
Original member Current member NCBI NM_207280.3 NP_997163.2 Accepted alive Link to Nucleotide Sequence:NM_207280.3Link to Protein Sequence:NP_997163.2Re-query CCDS DB by Nucleotide ID:NM_207280Re-query CCDS DB by Protein ID:NP_997163Link to BLAST:NP_997163.2

Chromosomal Locations for CCDS 48472.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 181510414 181511385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGCTTGCCCAGAGCCCTGGAGATGCACCCCCGCCAACACCACACCTTACTATTCTAAATACATATCTCA
AGCCAAAGTTGCTAACGAGCTTGGAGAAACGGGTAAAAAGGAAGACAGTGGTGGCGATGAAGGAGCTGAG
CCAGCAAATCCAAGAAACCAAATGCCGGCGGGAAAGGCTGCTGAAGGACAGCAGGCAGCTACTAGAGGAA
AAATACCGTGTGCAGGCTGAAAACCAGCTTTTCATGGAATACCTGCGTAAAAATAAGGAACAGTGTGAGA
AGAAACAGGAGGAGCTGTGGAAGCAGTACGTCCAAGAATGTGGCGAGATAGAACGCGAGAGACAAGAATT
GGCATCCAGATACAACCAGAGAAACGCAGCTCTTCAAGCCCAGCTCCTGCAGGGCAGAAAGACCCAGAAG
GATTTGAAGCAGCAGTTGCAGGCACTGAAGCCAGTTTACAAGATAAAGGAGGGCCAGGACGTGAAAATAC
AGACCTTGGAGAAGGAGCAAGAGAAAGTCCGAAGTGAGACTGCGACCAAGGACCGGGAGGCGCACTTCCA
GTTCCTGCGGGAAAAGGCACTGATGGAGAAGGAGCTGCAAGAGTGGCATCTGATGGAGCTGGGGCAGATC
AACACCACGGGGCTTACGAGGAAGTACAAGGCCTTGGCGCTAGCAGCCAAGCAGGCTCATTCTGAGTTCT
GTGGCAGTCTCCACAGGGAGAACCAGCAGCTACGCAAGGAGCTTCAGCAACTGAGCCAGGAGTACGGCAG
GTTGGATGCTGTGAGGAGCCAGCTGGAAAAGCACCGGCAGCTGGCGAAGGAGCAGCAGTGGTACCTAGAA
GCCTTGACCAGAGGGCGGCAGCGGCTGCAGGCAGAACGCGAGCGCCATCATCGTGGTCATAACCCACGCC
TCAAGGAACAGAGAGCTTCAAAGACCATGCTGAGCACCAAATCAAAAGCAAGTTCAAAGTAA

Translation (323 aa):
MLAQSPGDAPPPTPHLTILNTYLKPKLLTSLEKRVKRKTVVAMKELSQQIQETKCRRERLLKDSRQLLEE
KYRVQAENQLFMEYLRKNKEQCEKKQEELWKQYVQECGEIERERQELASRYNQRNAALQAQLLQGRKTQK
DLKQQLQALKPVYKIKEGQDVKIQTLEKEQEKVRSETATKDREAHFQFLREKALMEKELQEWHLMELGQI
NTTGLTRKYKALALAAKQAHSEFCGSLHRENQQLRKELQQLSQEYGRLDAVRSQLEKHRQLAKEQQWYLE
ALTRGRQRLQAERERHHRGHNPRLKEQRASKTMLSTKSKASSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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