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Report for CCDS51781.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51781.1 Public Mus musculus 6 Plekha8 23 108 98 CCDS HistoryNCBI Gene:231999Re-query CCDS DB by CCDS ID:51781.1Re-query CCDS DB by GeneID:231999See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51781.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119706.7 ENSMUSP00000112466.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119706.7Link to Ensembl Protein Viewer:ENSMUSP00000112466.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119706Re-query CCDS DB by Protein ID:ENSMUSP00000112466
Original member Current member NCBI NM_001164361.1 NP_001157833.1 Accepted alive Link to Nucleotide Sequence:NM_001164361.1Link to Protein Sequence:NP_001157833.1Re-query CCDS DB by Nucleotide ID:NM_001164361Re-query CCDS DB by Protein ID:NP_001157833Link to BLAST:NP_001157833.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157833.1 519 Q80W71-1 519 100% 0 0

Chromosomal Locations for CCDS 51781.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 54595432 54595471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54613092 54613208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54615215 54615370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54616633 54616757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54619194 54619352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54620272 54620312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54622121 54622278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54624075 54624231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54624553 54624638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54628846 54628904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54629820 54629950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54630504 54630574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54635710 54635771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54640784 54640981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1560 nt):
ATGGAGGGCGTGCTGTACAAGTGGACCAACTACCTGAGCGGTTGGCAGCCTCGATGGTTCCTTCTCTGTG
GGGGAATACTGTCCTATTACGACTCTCCTGAGGATGCCTGGAAGGGTTGCAAAGGGAGCATCCAGATGGC
AGTCTGTGAGATTCAAGTTCATTCCGTGGATAACACTCGCATGGACCTCATCATCCCCGGGGAACAGTAT
TTCTACTTAAAAGCCAGGAGTGTGGCAGAGAGACAGCGGTGGCTGGTGGCTCTGGGATCTGCCAAGGCCT
GCCTGACAGATAGTAGGACTCAGAAGGAAAAAGAATTTGCAGAAAACACTGAAAACTTGAAAACCAAAAT
GTCGGAGCTAAGACTGTACTGTGACCTCCTTGTTCAACAAGTAGATAAAACAAAAGAAGTGGCCACAGCC
GGTGTCACTGACTCTGAGGAGGGAATTGATGTGGGAACCCTGCTAAAATCGACCTGCAACACTTTCCTGA
AGACCTTGGAAGAATGCATGCAGATTGCAAACGCAGCCTTTACCTCCGAACTGCTTTACCATACACCCCC
AGGGTCCCCTCAACTAGCGGTGCTTAAGTCCAGCAAGATGAAACATCCCATCATACCAATTCATAATTCG
TTGGAAAGGTCGATGGAGTTAAACAGTTGTGAAAATGGATCGCTAAGTATAGAAGTAAATGGTGATGAAG
AAATCCTAATGAAAACCAAGAGTTCCTTGTATTTGAAGTCCACAGAGGTGGATTGCAGCATCTCCAGTGA
AGAAAACACAGATGACAATGTGACAGTCCAGGGGGAGATAATGAAGGAAGATGGCGAGGAAAACCTGGAG
AGTCATGACAAGGATCCGGCACAGCCTGGATCAGACTCGGTTTGCTCGCCAGAATCTCCCTGGGAAGACA
ATGAAGAAGTTATTCCAACTTTCTTCAGTACTATGAATACCAGCTTTAGTGACATTGAACTTCTGGAGGA
CAGTGGCATTCCCACAGAAGCATTCTTGGCCTCCTGTTATGCAGTGGTTCCAGTCCTAGACAAACTTGGT
CCCACAGTGTTTGCTCCTGTTAAGATGGATCTTGTTGGAAATATTAAGAAGGTAAATCAGAAGTACATAA
CCAACAAGGAAGAGTTTACTACCCTCCAGAAGATAGTGCTGCATGAGGTGGAGGCTGACGTCGCTCAGGT
TAGGAACTCGGCGACGGAAGCCCTCTTGTGGCTGAAGAGAGGTCTCAAATTTCTAAAGGGATTTTTGACA
GAAGTGAAGAATGGAGAAAAGGATATCCAGACAGCACTGAATAACGCATATGGCAAAACATTACGGCAAC
ACCATGGCTGGGTAGTTCGAGGGGTCTTTGCGTTAGCACTGAGGGCAGCGCCATCCTATGAGGACTTTGT
AGCTGCGCTAACCATAAAAGAAGGCGACCACCAGAAAGAAGCTTTCAGTGCTGGCATGCAGAGGGACCTC
AGCCTTTACCTCCCCGCTATGGAAAAGCAGCTGGCCATACTGGACACGTTATATGAGATCCACGGGCTGG
AATCTGATGAGGTGGTGTGA

Translation (519 aa):
MEGVLYKWTNYLSGWQPRWFLLCGGILSYYDSPEDAWKGCKGSIQMAVCEIQVHSVDNTRMDLIIPGEQY
FYLKARSVAERQRWLVALGSAKACLTDSRTQKEKEFAENTENLKTKMSELRLYCDLLVQQVDKTKEVATA
GVTDSEEGIDVGTLLKSTCNTFLKTLEECMQIANAAFTSELLYHTPPGSPQLAVLKSSKMKHPIIPIHNS
LERSMELNSCENGSLSIEVNGDEEILMKTKSSLYLKSTEVDCSISSEENTDDNVTVQGEIMKEDGEENLE
SHDKDPAQPGSDSVCSPESPWEDNEEVIPTFFSTMNTSFSDIELLEDSGIPTEAFLASCYAVVPVLDKLG
PTVFAPVKMDLVGNIKKVNQKYITNKEEFTTLQKIVLHEVEADVAQVRNSATEALLWLKRGLKFLKGFLT
EVKNGEKDIQTALNNAYGKTLRQHHGWVVRGVFALALRAAPSYEDFVAALTIKEGDHQKEAFSAGMQRDL
SLYLPAMEKQLAILDTLYEIHGLESDEVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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