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Report for CCDS7890.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7890.2 Public Homo sapiens 11 ABTB2 24 110 108 CCDS HistoryNCBI Gene:25841Re-query CCDS DB by CCDS ID:7890.2See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 7890.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 7890.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000435224.3 ENSP00000410157.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000435224.3Link to Ensembl Protein Viewer:ENSP00000410157.2Re-query CCDS DB by Nucleotide ID:ENST00000435224Re-query CCDS DB by Protein ID:ENSP00000410157
Original member Current member NCBI NM_145804.3 NP_665803.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145804.3Link to Protein Sequence:NP_665803.2Re-query CCDS DB by Nucleotide ID:NM_145804Re-query CCDS DB by Protein ID:NP_665803Link to BLAST:NP_665803.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_665803.2 1025 Q8N961-1 1025 100% 0 0

Chromosomal Locations for CCDS 7890.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 34152387 34152584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34154265 34154378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34154701 34154769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34159296 34159386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34159906 34160008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34160248 34160353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34160903 34161081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34162576 34162805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34164686 34164821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34165260 34165356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34167259 34167360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34167903 34167992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34170906 34171071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34173155 34173307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34197325 34197538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34204544 34204690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34356701 34357583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3078 nt):
ATGGCCGGGACGTACAGCTCGACTCTGAAGACGCTGGAGGACTTGACCTTGGACTCCGGGTATGGGGCCG
GGGACTCGTGCCGCTCGCTCAGCCTCTCGTCCTCCAAGTCCAACTCGCAGGCGCTCAACTCTTCGGCGCA
GCAGCACCGCGGGGCGGCCTGGTGGTGCTACTCCGGCTCCATGAACAGCCGCCACAACAGCTGGGACACG
GTGAACACGGTGCTGCCCGAGGACCCCGAAGTGGCCGACCTCTTCTCGCGCTGTCCGCGGCTCCCCGAGC
TGGAGGAGTTCCCCTGGACCGAAGGAGACGTGGCCCGGGTGCTCCGCAAAGGCGCTGGCGGCCGGCGGCT
GCCCCAGTTCTCCGCCGAGGCGGTGAGGCGCCTGGCCGGGCTGCTCCGCAGGGCACTGATCCGCGTGGCC
CGCGAGGCGCAGCGCCTGAGCGTGCTGCACGCCAAGTGCACCCGCTTTGAGGTGCAGAGCGCCGTGCGCC
TGGTGCACAGCTGGGCGCTGGCCGAGAGCTGCGCGCTGGCAGCCGTCAAGGCGCTGTCCCTGTACAGCAT
GAGCGCCGGCGACGGGCTGCGCCGGGGCAAGTCCGCGCGCTGCGGCCTCACCTTCTCAGTGGGTCGCTTT
TTCCGCTGGATGGTGGACACCCGAATCTCCGTGCGCATCCACGAGTACGCAGCCATCTCCCTCACCGCCT
GCATGGAGAACCTGGTGGAGGAGATCCGGGCCAGGGTGATGGCCAGCCACAGCCCTGATGGCGGAGGGGC
CGGAGGCGGGGAGGTGTCTGCTGAGGCCCTGGAGATGGTCATCAACAACGACGCCGAGCTCTGGGGCGTC
TTGCAGCCCTATGAGCATCTCATCTGCGGCAAGAACGCCAATGGTGTCCTCTCCCTCCCCGCATACTTCA
GCCCCTACAACGGCGGGTCCCTGGGCCATGACGAGCGAGCCGATGCCTATGCCCAGCTGGAGCTCCGAAC
CCTGGAGCAGTCCCTCCTGGCCACCTGCGTGGGCAGCATCTCGGAGCTGAGTGACTTGGTCTCCCGTGCC
ATGCACCACATGCAGGGGCGTCACCCCCTGTGCCCGGGTGCCAGCCCTGCCCGCCAGGCCCGCCAGCCGC
CACAGCCCATCACTTGGTCCCCCGACGCCCTCCACACGCTCTACTACTTTCTGCGGTGTCCACAGATGGA
GTCCATGGAGAACCCCAACCTGGACCCCCCGAGAATGACCTTGAACAATGAACGGCCCTTCATGCTGCTG
CCGCCCCTCATGGAGTGGATGCGCGTGGCCATCACCTACGCAGAGCACCGCCGCAGCCTCACCGTGGACA
GCGGCGACATCCGGCAGGCAGCCCGGCTGCTGCTGCCTGGTCTGGACTGTGAACCTCGGCAGCTCAAACC
CGAACACTGTTTCAGTTCCTTCCGGAGGCTGGATGCCCGAGCAGCTACTGAAAAATTCAACCAGGACCTG
GGTTTCCGCATGCTCAACTGTGGGAGGACGGACCTCATCAACCAAGCCATCGAGGCCTTGGGTCCGGATG
GGGTTAACACCATGGATGACCAGGGTATGACGCCACTGATGTACGCCTGCGCTGCTGGGGACGAAGCGAT
GGTCCAGATGTTGATTGATGCTGGGGCAAACTTGGACATCCAGGTTCCAAGCAACTCCCCCAGGCACCCT
TCCATCCACCCCGACAGCCGGCACTGGACCTCACTGACATTCGCTGTGCTGCATGGACACATCTCTGTGG
TCCAGTTGCTGCTGGATGCTGGTGCCCATGTCGAGGGCTCGGCAGTGAACGGCGGCGAGGACAGCTATGC
GGAGACGCCCCTGCAGCTGGCCTCTGCGGCAGGGAACTATGAGCTGGTCAGTTTGTTGCTGAGCCGAGGC
GCCGACCCCCTCCTCAGCATGCTGGAGGCCCACGGCATGGGCTCCTCCCTCCACGAGGACATGAACTGCT
TCAGCCACTCAGCTGCCCACGGCCACAGGAACGTCCTGAGGAAGCTCCTGACGCAGCCACAGCAGGCTAA
AGCGGACGTGCTGTCCCTGGAGGAGATCCTGGCCGAGGGTGTGGAGGAAAGTGATGCGTCGAGCCAGGGC
AGTGGCAGCGAGGGGCCCGTGCGGCTGAGCCGGACCCGCACCAAGGCCCTACAGGAGGCCATGTACTACA
GCGCTGAGCACGGCTACGTGGACATCACCATGGAGCTGAGGGCACTGGGAGTCCCCTGGAAGCTGCACAT
CTGGATCGAGTCTCTGAGGACCTCGTTCTCGCAGTCGCGGTACTCGGTGGTGCAGAGCCTCCTGCGGGAC
TTCAGCTCCATCAGAGAGGAGGAGTACAACGAGGAGCTGGTGACCGAGGGCTTGCAGCTCATGTTCGACA
TCCTCAAGACCAGCAAAAACGACTCCGTCATCCAGCAACTGGCTACCATCTTCACCCACTGCTATGGCAG
CAGTCCCATCCCCAGCATCCCAGAGATCCGGAAGACCCTGCCGGCCAGGCTAGATCCACACTTTTTGAAC
AATAAGGAGATGTCAGATGTGACCTTCCTGGTGGAAGGAAAGCTGTTTTATGCACATAAAGTCCTGCTGG
TGACAGCTTCTAACAGGTTCAAGACACTAATGACCAATAAATCAGAACAGGATGGGGACAGCAGCAAGAC
CATCGAGATCAGCGACATGAAGTACCACATTTTTCAGATGATGATGCAGTATCTGTACTACGGAGGAACA
GAATCCATGGAGATCCCCACCACTGACATCCTGGAGCTGCTGTCAGCTGCCAGCCTGTTCCAGCTGGATG
CCCTGCAGAGGCACTGCGAGATCCTGTGCTCCCAGACCCTCAGCATGGAGAGTGCCGTGAACACCTACAA
ATATGCCAAGATCCACAATGCCCCAGAACTGGCCCTGTTCTGTGAGGGCTTCTTCCTCAAGCACATGAAG
GCCCTACTGGAGCAGGATGCCTTCCGGCAGCTCATCTACGGCCGCAGCAGCAAAGTGCAGGGCCTGGATC
CACTGCAGGACCTGCAGAACACCCTGGCAGAGCGCGTGCACTCTGTCTACATCACCTCCCGGGTGTGA

Translation (1025 aa):
MAGTYSSTLKTLEDLTLDSGYGAGDSCRSLSLSSSKSNSQALNSSAQQHRGAAWWCYSGSMNSRHNSWDT
VNTVLPEDPEVADLFSRCPRLPELEEFPWTEGDVARVLRKGAGGRRLPQFSAEAVRRLAGLLRRALIRVA
REAQRLSVLHAKCTRFEVQSAVRLVHSWALAESCALAAVKALSLYSMSAGDGLRRGKSARCGLTFSVGRF
FRWMVDTRISVRIHEYAAISLTACMENLVEEIRARVMASHSPDGGGAGGGEVSAEALEMVINNDAELWGV
LQPYEHLICGKNANGVLSLPAYFSPYNGGSLGHDERADAYAQLELRTLEQSLLATCVGSISELSDLVSRA
MHHMQGRHPLCPGASPARQARQPPQPITWSPDALHTLYYFLRCPQMESMENPNLDPPRMTLNNERPFMLL
PPLMEWMRVAITYAEHRRSLTVDSGDIRQAARLLLPGLDCEPRQLKPEHCFSSFRRLDARAATEKFNQDL
GFRMLNCGRTDLINQAIEALGPDGVNTMDDQGMTPLMYACAAGDEAMVQMLIDAGANLDIQVPSNSPRHP
SIHPDSRHWTSLTFAVLHGHISVVQLLLDAGAHVEGSAVNGGEDSYAETPLQLASAAGNYELVSLLLSRG
ADPLLSMLEAHGMGSSLHEDMNCFSHSAAHGHRNVLRKLLTQPQQAKADVLSLEEILAEGVEESDASSQG
SGSEGPVRLSRTRTKALQEAMYYSAEHGYVDITMELRALGVPWKLHIWIESLRTSFSQSRYSVVQSLLRD
FSSIREEEYNEELVTEGLQLMFDILKTSKNDSVIQQLATIFTHCYGSSPIPSIPEIRKTLPARLDPHFLN
NKEMSDVTFLVEGKLFYAHKVLLVTASNRFKTLMTNKSEQDGDSSKTIEISDMKYHIFQMMMQYLYYGGT
ESMEIPTTDILELLSAASLFQLDALQRHCEILCSQTLSMESAVNTYKYAKIHNAPELALFCEGFFLKHMK
ALLEQDAFRQLIYGRSSKVQGLDPLQDLQNTLAERVHSVYITSRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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