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Report for CCDS16267.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16267.1 Public Mus musculus 2 Or8k40 23 108 98 CCDS HistoryNCBI Gene:258844Re-query CCDS DB by CCDS ID:16267.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16267.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099875.1 ENSMUSP00000097460.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099875.1Link to Ensembl Protein Viewer:ENSMUSP00000097460.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099875Re-query CCDS DB by Protein ID:ENSMUSP00000097460
Original member Current member EBI ENSMUST00000217043.2 ENSMUSP00000149968.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217043.2Link to Ensembl Protein Viewer:ENSMUSP00000149968.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217043Re-query CCDS DB by Protein ID:ENSMUSP00000149968
Original member Current member EBI ENSMUST00000215991.1 ENSMUSP00000150257.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215991.1Link to Ensembl Protein Viewer:ENSMUSP00000150257.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215991Re-query CCDS DB by Protein ID:ENSMUSP00000150257
Original member Current member NCBI NM_146847.1 NP_667058.1 Accepted alive Link to Nucleotide Sequence:NM_146847.1Link to Protein Sequence:NP_667058.1Re-query CCDS DB by Nucleotide ID:NM_146847Re-query CCDS DB by Protein ID:NP_667058Link to BLAST:NP_667058.1

Chromosomal Locations for CCDS 16267.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 86753795 86754736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGAAGGAACACAATCTCACAGTAATGACTGAATTCATCCTAATGGGTATCAGTGACCACTCTGAATTGC
AGGCCCCATTATTTGGGCTGTTCCTTGCCATATACATGACCTCAATGGTAGGTAATTTGGGAATCATTGT
TCTCACCACAGTGGACTCACGCCTGCAAACACCCATGTACTTCTTTCTCAGACACCTGGCTATTACAGAT
CTTGGATATTCTACAGCTGTGGGACCCAAAATGTTGGAAAATTTTGTTGTAGATCAAAATACAATTTCAT
TTAATCTTTGTGCCACACAACTAGCTTTCTTTCTTGTATTCATTGGTAGTGAGCTATTCATTCTCTCTGC
GATGTCCTATGACCGCTATGTGGCCATCTGTAAGCCTCTGCTCTACACTGTCCTCATGTCCCAAAAACTA
TGTTGGGTTCTTATGTCAATGCCTTATCTCTACTGCACATTTGTGTCTCTTCTCATCACAGTGAAGATTT
TTACTTCATCCTTCTGTGGCTACAATGTCATTAACCATTTCTACTGTGACTGTATCCCCTTGCTGTCTCT
ACTCTGTTCACATGCAGAGGAAATCGCATTTATTGTTATGATCTTTGCAGCTTTTGATTTGATTGTGTCT
CTTCTTATTGTTCTGGTATCCTACATGTTTATCCTCATAGCAGTTCTCAGGATGAACTCTGCAGAGGGCA
GGTACAAGGCTTTCTCCACATGTGGGTCCCACCTGACAGTGGTGACAGTGTTCTATGGTACTTTAATATT
TATGTATGTACAACCTCAGTCCAGTCATTCTGATGACAATGATAAGGTGTCTTCAATTTTTTACACCCTC
GTTATACCCATGCTGAATCCTTTGATCTATAGTTTGAGGAACAAGGATGTAAAATTTGCCCTACATAGGA
CTTGGAGAAATATTTGTAAGATCTTCCCTTAG

Translation (313 aa):
MKEHNLTVMTEFILMGISDHSELQAPLFGLFLAIYMTSMVGNLGIIVLTTVDSRLQTPMYFFLRHLAITD
LGYSTAVGPKMLENFVVDQNTISFNLCATQLAFFLVFIGSELFILSAMSYDRYVAICKPLLYTVLMSQKL
CWVLMSMPYLYCTFVSLLITVKIFTSSFCGYNVINHFYCDCIPLLSLLCSHAEEIAFIVMIFAAFDLIVS
LLIVLVSYMFILIAVLRMNSAEGRYKAFSTCGSHLTVVTVFYGTLIFMYVQPQSSHSDDNDKVSSIFYTL
VIPMLNPLIYSLRNKDVKFALHRTWRNICKIFP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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