CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
![](/corehtml/transparent.gif) |
Report for CCDS57572.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
57572.1 |
Public |
Mus musculus |
7 |
Or52n2c |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:259061](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:57572.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 7 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68
Review status: Provisional (this record has not been manually reviewed by the collaboration) Sequence IDs included in CCDS 57572.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000164391.2 |
ENSMUSP00000130975.2 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000164391.2](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000130975.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000164391](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000130975](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000215359.1 |
ENSMUSP00000150824.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000215359.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000150824.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000215359](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000150824](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_147059.1 |
NP_667270.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_147059.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_667270.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_147059](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_667270](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_667270.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 57572.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (957 nt): ATGTCTGGAGCCAATAGCTCCAGCTTGACCCCAGAATTCTTTATCCTGAATGGTGTTCCTGGGCTGGAAG ATGCACATGTCTGGATCTCTCTGCCATTCTGCTTCATGTACATGATTGCTGTGGTGGGGAACTGTGGGCT TATCTACCTCATTGGCCATGAGGAGGCTCTGCACCGGCCCATGTTCTACTTCCTGGCCTTACTCTCCTTC ACTGATGTTACCTGGTGTACTACCACTGTGCCCAATATGCTGTGTATATTCTGGTTCAATTTCAAGAAGA TTGGATTTAATTCCTGCCTTGCCCAAATGTTCTTTGTTCATATGTTGACTGGAATGGAGTCTGGTGTGCT CATGCTCATGGCCCTGGACCGCTATGTAGCCATCTGCAATCCTCTACGATATACTACCATCCTCACCAAC CCTGTGATTGCCAAGGCTTGTCTTGCAACATTCTTGAGGAGTGTAATGCTCATCTTTCCATTCACTCTCC TCACCAAGCGCTTGCCCTATTGTAGAAGCATTCTTATCCCCCATACTTACTGTGACCACATGTCTGTGGC CAAGGTATCCTGTGGCAATGCCAAGGTCAATGCAATCTATGGCCTCATGGTTGCTTTATTGATTGGTGTG TTTGATATTTGTTGTATCTCTGTGTCTTACACTATGATATTGAGAGCAGTGGTGAGTCTGTCCTCTGCTG ATGCTCGTCACAAGGCCTTCAGCACCTGTACATCTCACATCTGTGCTATTGTGATCACTTATGTGCCTGC CTTTTTTACTTTTTTCACTCATCGTTTTGGAGGACACACTATTCCCCACCATGTCCACATCATAGTGGCT AACCTCTACCTGCTACTGCCCCCTACCATGAACCCAATTGTTTATGGAGTCAAGACCAAGCAGATTCGGG AAAGTGTAATCAAGTTTTTACTTGGAGACAAAATGGGTTTTACCTAA
Translation (318 aa): MSGANSSSLTPEFFILNGVPGLEDAHVWISLPFCFMYMIAVVGNCGLIYLIGHEEALHRPMFYFLALLSF TDVTWCTTTVPNMLCIFWFNFKKIGFNSCLAQMFFVHMLTGMESGVLMLMALDRYVAICNPLRYTTILTN PVIAKACLATFLRSVMLIFPFTLLTKRLPYCRSILIPHTYCDHMSVAKVSCGNAKVNAIYGLMVALLIGV FDICCISVSYTMILRAVVSLSSADARHKAFSTCTSHICAIVITYVPAFFTFFTHRFGGHTIPHHVHIIVA NLYLLLPPTMNPIVYGVKTKQIRESVIKFLLGDKMGFT
|