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Report for CCDS34403.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34403.1 Public Homo sapiens 6 LY6G6F 24 110 108 CCDS HistoryNCBI Gene:259215Re-query CCDS DB by CCDS ID:34403.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34403.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375832.5 ENSP00000364992.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375832.5Link to Ensembl Protein Viewer:ENSP00000364992.5Re-query CCDS DB by Nucleotide ID:ENST00000375832Re-query CCDS DB by Protein ID:ENSP00000364992
Original member Current member NCBI NM_001003693.3 NP_001003693.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001003693.3Link to Protein Sequence:NP_001003693.1Re-query CCDS DB by Nucleotide ID:NM_001003693Re-query CCDS DB by Protein ID:NP_001003693Link to BLAST:NP_001003693.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001003693.1 297 Q5SQ64-1 297 100% 0 0

Chromosomal Locations for CCDS 34403.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 31706907 31706958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31707458 31707787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31707871 31708134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31710026 31710181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31710352 31710418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31710567 31710591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGGCAGTCTTATTCCTCCTCCTGTTCCTATGTGGAACTCCCCAGGCTGCAGACAACATGCAGGCCATCT
ATGTGGCCTTGGGGGAGGCAGTAGAGCTGCCATGTCCCTCACCACCTACTCTACATGGGGACGAACACCT
GTCATGGTTCTGCAGCCCTGCAGCAGGCTCCTTCACCACCCTGGTAGCCCAAGTCCAAGTGGGCAGGCCA
GCCCCAGACCCTGGAAAACCAGGAAGGGAATCCAGGCTCAGACTGCTGGGGAACTATTCTTTGTGGTTGG
AGGGATCCAAAGAGGAAGATGCCGGGCGGTACTGGTGCGCTGTGCTAGGTCAGCACCACAACTACCAGAA
CTGGAGGGTGTACGACGTCTTGGTGCTCAAAGGATCCCAGTTATCTGCAAGGGCTGCAGATGGATCCCCC
TGCAATGTCCTCCTGTGCTCTGTGGTCCCCAGCAGACGCATGGACTCTGTGACCTGGCAGGAAGGGAAGG
GTCCCGTGAGGGGCCGTGTTCAGTCCTTCTGGGGCAGTGAGGCTGCCCTGCTCTTGGTGTGTCCTGGGGA
GGGGCTTTCTGAGCCCAGGAGCCGAAGACCAAGAATCATCCGCTGCCTCATGACTCACAACAAAGGGGTC
AGCTTTAGCCTGGCAGCCTCCATCGATGCTTCTCCTGCCCTCTGTGCCCCTTCCACGGGCTGGGACATGC
CTTGGATTCTGATGCTGCTGCTCACAATGGGCCAGGGAGTTGTCATCCTGGCCCTCAGCATCGTGCTCTG
GAGGCAGAGGGTCCGTGGGGCTCCAGGCAGAGATGCCTCGATTCCTCAGTTCAAACCCGAAATCCAGGTC
TATGAGAACATCCATTTGGCCCGTCTTGGCCCACCTGCCCACAAGCCCAGGTGA

Translation (297 aa):
MAVLFLLLFLCGTPQAADNMQAIYVALGEAVELPCPSPPTLHGDEHLSWFCSPAAGSFTTLVAQVQVGRP
APDPGKPGRESRLRLLGNYSLWLEGSKEEDAGRYWCAVLGQHHNYQNWRVYDVLVLKGSQLSARAADGSP
CNVLLCSVVPSRRMDSVTWQEGKGPVRGRVQSFWGSEAALLLVCPGEGLSEPRSRRPRIIRCLMTHNKGV
SFSLAASIDASPALCAPSTGWDMPWILMLLLTMGQGVVILALSIVLWRQRVRGAPGRDASIPQFKPEIQV
YENIHLARLGPPAHKPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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