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Report for CCDS17769.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17769.1 Public Mus musculus 3 Fndc7 23 108 98 CCDS HistoryNCBI Gene:320181Re-query CCDS DB by CCDS ID:17769.1Re-query CCDS DB by GeneID:320181See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17769.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102620.9 ENSMUSP00000099680.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102620.9Link to Ensembl Protein Viewer:ENSMUSP00000099680.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102620Re-query CCDS DB by Protein ID:ENSMUSP00000099680
Original member Current member NCBI NM_177091.5 NP_796065.2 Accepted alive Link to Nucleotide Sequence:NM_177091.5Link to Protein Sequence:NP_796065.2Re-query CCDS DB by Nucleotide ID:NM_177091Re-query CCDS DB by Protein ID:NP_796065Link to BLAST:NP_796065.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796065.2 737 A2AED3-1 737 100% 0 0

Chromosomal Locations for CCDS 17769.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 108856367 108856410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108858878 108858907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108862727 108862987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108867062 108867316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108869100 108869354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108870528 108870785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108872116 108872370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108876436 108876693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108881326 108881586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108883372 108883626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108889093 108889111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108889644 108889706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2214 nt):
ATGGCTGGAAGACCTGAGAAGTGTTTTTCTTTGATTAGATTCACTCTCCTCTGTCTGAAAATGGTTATTT
CATCTAAAACAGCTCCTGAAATACCAACTATTGATCAGGCCTATTCAAAAATCAGCAATAGTATCACCGT
AGAATGGACTACCGTGCCAGGGGCCACAAGTTACTTGCTCACAGCTGAAGATGGGAACACAATCATTGAG
ACCACAGTGGCTAATTCCCCAGGGACGGTGACAGGCCTGAAGGCTGCAACCTTGTACCAAATCACCATCA
GATCCATCAGCGCCTCTGGACAAAGCCAGGCATCATCTCCAAAGCAGGCAAAGACAGTGTTGGCTGCCCC
AGTTCTGGAGGTTAGCTCTCCAAGTCCAGACTCAATCCTTGTGAGCTGGGACGCCGTATACATGGCGATC
GGATTCTCCGTGTCTGTTATGCGAGCCAACGGCTTGGGTAGAATTTGGAAAGAGAATACTACAAACACCT
CCCTGACCTTCAGCAGTCTGGATGCCGGAACTCTCTACACTATAAAGGCCTACGCGTGGAATGCCAATGG
AATCCCCGGGGATGACTCCACCCGCAATCAGAGAACCAGTCCTCGTGCCCCTGCCAACATTCAAGTCTTC
TTTGACAGCGGGGCCCTAAAGGCGTCTGTTTCGTGGACCCCGACAGAAGGAGCGTTCAACTACACTGTGG
TGGCATCGAGTGATTCTTCCCAGCGCAGCTGCAGCACCACTCTCAGCTCCTGTAGCATTAGTTCCTTGCA
GTGTGGAACAGAGTACCTGATTTCTGTCTCAGCAAATAACGATGCTGGGTCCAGCAAGTCCTGCTCTGCA
CCAACCCTGAAGACTGTTGCTTGTGCACCTGGAAGGGTGATGATCCAGGAAGAGCCCCCTGGTCACTTGT
CTGTGGCTTGGTCCAATGTGGAGCTGGGTGACTATTATGTGGCTTTCGTGAAGAGTGATGACGGCTTGGA
GGTACACTGCAATACCTCCCTCACCCAGTGCAACTTCTTGTCTGAGTGTGGCTTCACGTACTTCATTAGT
GTGTTTGCCTATAACAAGGCAGGGCAGAGTCCTCTGGGCGATGTATTCAATTACACTACAGCTCCGTGTT
GTCCTAATGACATTAGCCCAGTGTTGGTGTCCAGTGACAGGGTGGAAATTGCCTGGTCTCCTGTGCGTGG
TGCTGAACTCTATGAAACCAAGGCCATAGCTGGGTATAGCATTGTGGAGTGCAACGACACCGCTCCTGCT
TGCACTCTCTCTGCCTTGGATTGTGACACCAAGTACAACGTCACAGTGTATTCCTTCAGTGAGGTCCGAG
GCAGCAATCTGTCATGCTCTTCCCACTTTATCACCACAGCTCCTTGCAGTCCTGAAATAAAAAATATTTC
GAAGGATGCATTCTCCATGATCAATGTGCACTGGCGGTCGACTAATGAAGGCGCCACTTACACGGTGACG
GCCCAGGGCAAGAAGGGGCTGTTCCAGTGCAGCAGCACCGGGGAGACCTGCAGGATGGGGGGCCTGCCCT
GCGGCTCCATGTTCTCTGTCACTGCTGTGGCCGAGACTCAGGCGGGAAAGAGCCTGCCCAGCTACAGCGT
GCCCCTGGAAACAGTGCCCTGCTGTCCAGCTGGTCTGACAGCAGCTCAGGTCACCCAGTCTATAATCAAC
GTGAGCTGGACTGCTGGGGCAGTGGCTCAAACCTATGCTGCAGTGCTGGAGTCATACATCGGACAGTCTA
AGTGTCACACCCATCAAAACCACTGCCTTCTGGGATGCATCACATGTGGCATCAACTACACGGTGGCGTT
AAAAGCCATTAGTTCCACGGGACTGACTGCAGATTGTGCCTATCAAAGTTACTCTTCTAGTGTCTGTTGC
CCACTGGGGGTCAAATTATATAGGCTGGGCCCTAATGGCATCCGGATCTACTGGCGAGCCTCCAGGGGCG
CTGCCAATTATAGCACCGACCTCTATGGTTCCAAAGGCATCTTTACATGTGCCCCACATGCCGGTCTAAG
TTTCTGTGACATCACCAACATCCCCTGTGGGGACGTTTACACCGTGATGGTCTCACCAGTTGCTGAAACA
GGACTGAAGCTTACTTTCTGCCCAAAAAAAATATACTCAGTTACCTGTTCTGGCAGTACTCTTGGAATGG
TGATTTACAGAGGGAAGAGGAACGATACAGCGAGCCCCAGGTAA

Translation (737 aa):
MAGRPEKCFSLIRFTLLCLKMVISSKTAPEIPTIDQAYSKISNSITVEWTTVPGATSYLLTAEDGNTIIE
TTVANSPGTVTGLKAATLYQITIRSISASGQSQASSPKQAKTVLAAPVLEVSSPSPDSILVSWDAVYMAI
GFSVSVMRANGLGRIWKENTTNTSLTFSSLDAGTLYTIKAYAWNANGIPGDDSTRNQRTSPRAPANIQVF
FDSGALKASVSWTPTEGAFNYTVVASSDSSQRSCSTTLSSCSISSLQCGTEYLISVSANNDAGSSKSCSA
PTLKTVACAPGRVMIQEEPPGHLSVAWSNVELGDYYVAFVKSDDGLEVHCNTSLTQCNFLSECGFTYFIS
VFAYNKAGQSPLGDVFNYTTAPCCPNDISPVLVSSDRVEIAWSPVRGAELYETKAIAGYSIVECNDTAPA
CTLSALDCDTKYNVTVYSFSEVRGSNLSCSSHFITTAPCSPEIKNISKDAFSMINVHWRSTNEGATYTVT
AQGKKGLFQCSSTGETCRMGGLPCGSMFSVTAVAETQAGKSLPSYSVPLETVPCCPAGLTAAQVTQSIIN
VSWTAGAVAQTYAAVLESYIGQSKCHTHQNHCLLGCITCGINYTVALKAISSTGLTADCAYQSYSSSVCC
PLGVKLYRLGPNGIRIYWRASRGAANYSTDLYGSKGIFTCAPHAGLSFCDITNIPCGDVYTVMVSPVAET
GLKLTFCPKKIYSVTCSGSTLGMVIYRGKRNDTASPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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