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Report for CCDS50602.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50602.1 Public Mus musculus 2 Dcaf17 23 108 98 CCDS HistoryNCBI Gene:75763Re-query CCDS DB by CCDS ID:50602.1Re-query CCDS DB by GeneID:75763See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50602.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112159.8 ENSMUSP00000107785.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112159.8Link to Ensembl Protein Viewer:ENSMUSP00000107785.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112159Re-query CCDS DB by Protein ID:ENSMUSP00000107785
Original member Current member NCBI NM_001165982.1 NP_001159454.1 Accepted alive Link to Nucleotide Sequence:NM_001165982.1Link to Protein Sequence:NP_001159454.1Re-query CCDS DB by Nucleotide ID:NM_001165982Re-query CCDS DB by Protein ID:NP_001159454Link to BLAST:NP_001159454.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159454.1 286 Q3TUL7-3 286 100% 0 0

Chromosomal Locations for CCDS 50602.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 71055994 71056119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71056495 71056598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71060353 71060443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71063359 71063495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71073121 71073199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71075447 71075536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71078060 71078164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71081911 71082039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (861 nt):
ATGGGCCGGACCCGGAAGGCCAATGTGTGCCGCAGGCTGAGTCGCCGGGCTCTGGGCTTCTATGCACGCG
ACGCAGGCGTGGTGCAGAGGACGAACCTGGGCATCCTGCGGGCGCTGGTGTGCCAGGAGAGTACTAAATT
TAAGAATGTTTGGACAACTCATTCCAAGTCACCTATAGCCTATGAGAGAGGAAGAATATATTTTGACAAT
TACCGGTGCTGTGTCAGCAGTGTTGCATCAGAGCCAAGAAAACTTTATGAAATGCCAAAATGTTCCAAAT
CAGAAAAAATTGAGGATGCTTTATTATGGGAATGCCCAGTGGGAGACATACTTCCTGACCCATCAGACTA
TAAATCCTCACTCATAGCCCTGACTGCTCATAATTGGCTGCTTCGTATATCCGCAACTACAGGGGAAGTC
CTGGAGAAAATATACCTTGCTTCCTACTGCAAATTCAGGTACCTGAGCTGGGACACACCTCAGGAGGTCA
TCGCAGTGAAGTCGGCTCAGAACAAAGGCTCCGCAGCGGCTCGCCAGGCAGGCACTTCACCACCCGTTTT
GTTGTACCTCGCAGTGTTCCGGGTTCTGCCCTTTTCACTTGTAGGGATTCTAGAGATCAACAAAAAGGTT
TTTGAGAATGTCACAGATGCTACCTTGTCACATGGAATCCTGATTGTGATGTACAGCTCGGGACTAGTCA
GACTCTACAGCTTCCAAGCCATCATCGAACAGACTCACCACCTCCACTCTTTGAAGTTTCATCTCTGGAG
AACGCATTCCAGATTGGAGGCCATCCTTGGCACTACATCATCACGCCTAATAAGAAGAAACAGAAAGGAG
TTTTTCATATTTGTGCCCTAA

Translation (286 aa):
MGRTRKANVCRRLSRRALGFYARDAGVVQRTNLGILRALVCQESTKFKNVWTTHSKSPIAYERGRIYFDN
YRCCVSSVASEPRKLYEMPKCSKSEKIEDALLWECPVGDILPDPSDYKSSLIALTAHNWLLRISATTGEV
LEKIYLASYCKFRYLSWDTPQEVIAVKSAQNKGSAAARQAGTSPPVLLYLAVFRVLPFSLVGILEINKKV
FENVTDATLSHGILIVMYSSGLVRLYSFQAIIEQTHHLHSLKFHLWRTHSRLEAILGTTSSRLIRRNRKE
FFIFVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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