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Report for CCDS54339.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54339.1 Public Homo sapiens 2 CGREF1 24 110 108 CCDS HistoryNCBI Gene:10669Re-query CCDS DB by CCDS ID:54339.1Re-query CCDS DB by GeneID:10669See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54339.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000402550.5 ENSP00000385103.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000402550.5Link to Ensembl Protein Viewer:ENSP00000385103.1Re-query CCDS DB by Nucleotide ID:ENST00000402550Re-query CCDS DB by Protein ID:ENSP00000385103
Original member Current member NCBI NM_001166240.2 NP_001159712.1 Accepted alive Link to Nucleotide Sequence:NM_001166240.2Link to Protein Sequence:NP_001159712.1Re-query CCDS DB by Nucleotide ID:NM_001166240Re-query CCDS DB by Protein ID:NP_001159712Link to BLAST:NP_001159712.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159712.1 132 Q99674-2 132 100% 0 0

Chromosomal Locations for CCDS 54339.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 27099784 27099840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27102097 27102221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27102360 27102430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27102526 27102591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27104287 27104366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (399 nt):
ATGTTACCTTTGACGATGACAGTGTTAATCCTGCTGCTGCTCCCCACGGGTCAGGCTGCCCCAAAGGATG
GAGTCACAAGGCCAGACTCTGAAGTGCAGCATCAGCTCCTGCCCAACCCCTTCCAGCCAGGCCAGGAGCA
GCTCGGACTTCTGCAGAGCTACCTAAAGGGACTAGGAAGGACAGAAGTGCAACTGGAGCATCTGAGCCGG
GAGCAGGTTCTCCTCTACCTCTTTGCCCTCCATGACTATGACCAGAGTGGACAGCTGGATGGCCTGGAGC
TGCTGTCCATGTTGACAGCTGCTCTGGCCCCTGGAGCTGCCAACTCTCCTACCACCAACCCGGGCAACCT
GGACGCCAGGCTGGATGGAGGGGAGAAGGCGATGCAGCCGCAATGGTAG

Translation (132 aa):
MLPLTMTVLILLLLPTGQAAPKDGVTRPDSEVQHQLLPNPFQPGQEQLGLLQSYLKGLGRTEVQLEHLSR
EQVLLYLFALHDYDQSGQLDGLELLSMLTAALAPGAANSPTTNPGNLDARLDGGEKAMQPQW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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