NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8245.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8245.1 Public Homo sapiens 11 LRRC32 24 110 108 CCDS HistoryNCBI Gene:2615Re-query CCDS DB by CCDS ID:8245.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8245.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000260061.9 ENSP00000260061.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000260061.9Link to Ensembl Protein Viewer:ENSP00000260061.5Re-query CCDS DB by Nucleotide ID:ENST00000260061Re-query CCDS DB by Protein ID:ENSP00000260061
Original member Current member EBI ENST00000407242.6 ENSP00000384126.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000407242.6Link to Ensembl Protein Viewer:ENSP00000384126.2Re-query CCDS DB by Nucleotide ID:ENST00000407242Re-query CCDS DB by Protein ID:ENSP00000384126
Original member Current member EBI ENST00000404995.5 ENSP00000385766.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000404995.5Link to Ensembl Protein Viewer:ENSP00000385766.1Re-query CCDS DB by Nucleotide ID:ENST00000404995Re-query CCDS DB by Protein ID:ENSP00000385766
Original member Current member NCBI NM_001128922.2 NP_001122394.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001128922.2Link to Protein Sequence:NP_001122394.1Re-query CCDS DB by Nucleotide ID:NM_001128922Re-query CCDS DB by Protein ID:NP_001122394Link to BLAST:NP_001122394.1
Original member Current member NCBI NM_001370187.1 NP_001357116.1 Accepted alive Link to Nucleotide Sequence:NM_001370187.1Link to Protein Sequence:NP_001357116.1Re-query CCDS DB by Nucleotide ID:NM_001370187Re-query CCDS DB by Protein ID:NP_001357116Link to BLAST:NP_001357116.1
Original member Current member NCBI NM_001370188.1 NP_001357117.1 Accepted alive Link to Nucleotide Sequence:NM_001370188.1Link to Protein Sequence:NP_001357117.1Re-query CCDS DB by Nucleotide ID:NM_001370188Re-query CCDS DB by Protein ID:NP_001357117Link to BLAST:NP_001357117.1
Original member Current member NCBI NM_005512.3 NP_005503.1 Accepted alive Link to Nucleotide Sequence:NM_005512.3Link to Protein Sequence:NP_005503.1Re-query CCDS DB by Nucleotide ID:NM_005512Re-query CCDS DB by Protein ID:NP_005503Link to BLAST:NP_005503.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001122394.1 662 Q14392 662 100% 0 0
NP_001357116.1 662 Q14392 662 100% 0 0
NP_001357117.1 662 Q14392 662 100% 0 0
NP_005503.1 662 Q14392 662 100% 0 0

Chromosomal Locations for CCDS 8245.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 76659604 76661508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76665871 76665954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1989 nt):
ATGAGACCCCAGATCCTGCTGCTCCTGGCCCTGCTGACCCTAGGCCTGGCTGCACAACACCAAGACAAAG
TGCCCTGTAAGATGGTGGACAAGAAGGTCTCGTGCCAGGTTCTGGGCCTGCTCCAGGTCCCCTCGGTGCT
CCCGCCAGACACTGAGACCCTTGATCTATCTGGGAACCAGCTGCGGAGTATCCTGGCCTCACCCCTGGGC
TTCTACACAGCACTTCGTCACCTGGACCTGAGCACCAATGAGATCAGCTTCCTCCAGCCAGGAGCCTTCC
AGGCCCTGACCCACCTGGAGCACCTCAGCCTGGCTCACAACCGGCTGGCGATGGCCACTGCGCTGAGTGC
TGGTGGCCTGGGCCCCCTGCCACGCGTGACCTCCCTGGACCTGTCTGGGAACAGCCTGTACAGCGGCCTG
CTGGAGCGGCTGCTGGGGGAGGCACCCAGCCTGCATACCCTCTCACTGGCGGAGAACAGTCTGACTCGCC
TCACCCGCCACACCTTCCGGGACATGCCTGCGCTGGAGCAGCTTGACCTGCATAGCAACGTGCTGATGGA
CATCGAGGATGGCGCCTTCGAGGGTCTGCCCCGCCTGACCCATCTCAACCTCTCCAGGAATTCCCTCACC
TGCATCTCCGACTTCAGCCTCCAGCAGCTGCGGGTGCTAGACCTGAGCTGCAACAGCATCGAGGCCTTTC
AGACGGCCTCCCAGCCCCAGGCTGAGTTCCAGCTCACCTGGCTTGACCTGCGGGAGAACAAACTGCTCCA
TTTCCCCGACCTGGCCGCGCTCCCGAGACTCATCTACCTGAACTTGTCCAACAACCTCATCCGGCTCCCC
ACAGGGCCACCCCAGGACAGCAAGGGCATCCACGCACCTTCCGAGGGCTGGTCAGCCCTGCCCCTCTCAG
CCCCCAGCGGGAATGCCAGCGGCCGCCCCCTTTCCCAGCTCTTGAATCTGGATTTGAGCTACAATGAGAT
TGAGCTCATCCCCGACAGCTTTCTTGAGCACCTGACCTCCCTGTGCTTCCTGAACCTCAGCAGAAACTGC
TTGCGGACCTTTGAGGCCCGGCGCTTAGGCTCCCTGCCCTGCCTGATGCTCCTTGACTTAAGCCACAATG
CCCTGGAGACACTGGAACTGGGCGCCAGAGCCCTGGGGTCTCTGCGGACGCTGCTCCTACAGGGCAATGC
CCTGCGGGACCTGCCCCCATACACCTTTGCCAATCTGGCCAGCCTGCAGCGGCTCAACCTGCAGGGGAAC
CGAGTCAGCCCCTGTGGGGGGCCAGATGAGCCTGGCCCCTCCGGCTGTGTGGCCTTCTCCGGCATCACCT
CCCTCCGCAGCCTGAGCCTGGTGGATAATGAGATAGAGCTGCTCAGGGCAGGGGCCTTCCTCCACACCCC
ACTGACTGAGCTGGACCTTTCTTCCAATCCTGGGCTGGAGGTGGCCACGGGGGCCTTGGGAGGCCTGGAG
GCCTCCTTGGAGGTCCTGGCACTGCAGGGCAACGGGCTGATGGTCCTGCAGGTGGACCTGCCCTGCTTCA
TCTGCCTCAAGCGGCTCAATCTTGCCGAGAACCGCCTGAGCCACCTTCCCGCCTGGACACAGGCTGTGTC
ACTGGAGGTGCTGGACCTGCGAAACAACAGCTTCAGCCTCCTGCCAGGCAGTGCCATGGGTGGCCTGGAG
ACCAGCCTCCGGCGCCTCTACCTGCAGGGGAATCCACTCAGCTGCTGCGGCAATGGCTGGCTGGCAGCCC
AGCTGCACCAGGGCCGTGTGGACGTGGACGCCACCCAGGACCTGATCTGCCGCTTCAGCTCCCAGGAGGA
GGTGTCCCTGAGCCACGTGCGTCCCGAGGACTGTGAGAAGGGGGGACTGAAGAACATCAACCTCATCATC
ATCCTCACCTTCATACTGGTCTCTGCCATCCTCCTCACCACGCTGGCCGCCTGCTGCTGCGTCCGCCGGC
AGAAGTTTAACCAACAGTATAAAGCCTAA

Translation (662 aa):
MRPQILLLLALLTLGLAAQHQDKVPCKMVDKKVSCQVLGLLQVPSVLPPDTETLDLSGNQLRSILASPLG
FYTALRHLDLSTNEISFLQPGAFQALTHLEHLSLAHNRLAMATALSAGGLGPLPRVTSLDLSGNSLYSGL
LERLLGEAPSLHTLSLAENSLTRLTRHTFRDMPALEQLDLHSNVLMDIEDGAFEGLPRLTHLNLSRNSLT
CISDFSLQQLRVLDLSCNSIEAFQTASQPQAEFQLTWLDLRENKLLHFPDLAALPRLIYLNLSNNLIRLP
TGPPQDSKGIHAPSEGWSALPLSAPSGNASGRPLSQLLNLDLSYNEIELIPDSFLEHLTSLCFLNLSRNC
LRTFEARRLGSLPCLMLLDLSHNALETLELGARALGSLRTLLLQGNALRDLPPYTFANLASLQRLNLQGN
RVSPCGGPDEPGPSGCVAFSGITSLRSLSLVDNEIELLRAGAFLHTPLTELDLSSNPGLEVATGALGGLE
ASLEVLALQGNGLMVLQVDLPCFICLKRLNLAENRLSHLPAWTQAVSLEVLDLRNNSFSLLPGSAMGGLE
TSLRRLYLQGNPLSCCGNGWLAAQLHQGRVDVDATQDLICRFSSQEEVSLSHVRPEDCEKGGLKNINLII
ILTFILVSAILLTTLAACCCVRRQKFNQQYKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH