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Report for CCDS54150.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54150.1 Public Homo sapiens 17 DHX40 24 110 108 CCDS HistoryNCBI Gene:79665Re-query CCDS DB by CCDS ID:54150.1Re-query CCDS DB by GeneID:79665See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54150.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000425628.7 ENSP00000388749.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000425628.7Link to Ensembl Protein Viewer:ENSP00000388749.3Re-query CCDS DB by Nucleotide ID:ENST00000425628Re-query CCDS DB by Protein ID:ENSP00000388749
Original member Current member NCBI NM_001166301.2 NP_001159773.1 Accepted alive Link to Nucleotide Sequence:NM_001166301.2Link to Protein Sequence:NP_001159773.1Re-query CCDS DB by Nucleotide ID:NM_001166301Re-query CCDS DB by Protein ID:NP_001159773Link to BLAST:NP_001159773.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159773.1 702 Q8IX18-4 702 100% 0 0

Chromosomal Locations for CCDS 54150.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 59565672 59565783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59566627 59566709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59573116 59573235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59573740 59573967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59574188 59574254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59575340 59575471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59577266 59577365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59579472 59579558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59579697 59579879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59586153 59586233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59587896 59588053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59598737 59598851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59599375 59599483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59602522 59602616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59605115 59605184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59605446 59605674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59607033 59607172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2109 nt):
ATGTCCCGGTTTCCCGCAGTCGCGGGCAGGGCGCCAAGGCGGCAGGAGGAGGGTGAGCGGTCAAGAGACC
TCCAGGAAGAGCGGCTCTCGGCTGTTTGCATCGCCGATAGAGAAGAGAAAGGATGCACGTCCCAGGAGGG
AGGAACTACTCCAACTTTTCCTATTCAGAAACAAAGAAAAAAGATTATTCAAGCTGAGACAGCAATCAAA
TATATGACTGATGGATGTTTACTGAAACATATTCTGGGAGACCCAAATCTTACCAAATTCAGTGTCATTA
TTTTGGATGAAGCCCATGAAAGAACTCTAACTACAGATATCTTATTTGGTTTATTGAAGAAGCTATTTCA
GGAGAAGTCTCCTAATAGGAAGGAGCATTTAAAAGTGGTGGTAATGTCAGCAACTATGGAATTAGCCAAG
CTCTCTGCATTCTTTGGAAATTGTCCAATATTTGATATACCTGGAAGGCTTTATCCAGTCAGAGAGAAAT
TCTGCAATTTGATTGGTCCACGAGACAGAGAAAATACTGCGTATATTCAAGCGATTGTGAAAGTCACCAT
GGATATCCATTTGAATGAAATGGCTGGAGACATCTTGGTTTTTCTGACTGGCCAGTTTGAAATAGAAAAA
AGTTGTGAGTTACTTTTTCAGATGGCAGAGTCTGTTGATTATGATTATGATGTTCAAGATACCACCCTCG
ATGGCTTGTTAATATTGCCGTGTTATGGATCAATGACAACAGATCAACAGAGGAGGATATTTTTGCCACC
ACCACCTGGAATTAGAAAATGTGTCATATCCACCAATATTTCTGCAACGTCTTTGACAATAGATGGAATC
AGATATGTGGTAGATGGTGGCTTCGTGAAGCAGTTAAATCACAACCCCAGATTAGGGTTGGACATCCTGG
AGGTGGTTCCAATTTCAAAGAGCGAGGCATTACAGCGAAGTGGCCGAGCTGGCAGGACTTCTTCAGGAAA
ATGCTTTCGGATCTATAGTAAAGATTTTTGGAACCAGTGTATGCCTGACCATGTGATCCCTGAAATTAAG
AGAACTAGTTTGACATCTGTAGTTCTGACCTTAAAGTGCCTTGCCATACACGATGTCATAAGGTTTCCCT
ATTTGGATCCACCTAATGAGAGACTTATTTTAGAAGCTCTTAAACAACTTTACCAGTGTGATGCTATTGA
CAGGAGTGGCCATGTCACCAGATTGGGTTTGTCTATGGTGGAGTTTCCTTTGCCTCCACATCTGACATGT
GCAGTAATAAAAGCTGCTTCCCTGGATTGTGAAGATCTACTACTTCCAATAGCAGCAATGTTGTCTGTGG
AAAACGTCTTCATTAGACCTGTTGATCCAGAGTACCAGAAGGAAGCAGAACAGAGACATCGAGAATTGGC
AGCTAAAGCTGGAGGATTTAATGACTTTGCAACTTTAGCTGTCATCTTTGAACAATGCAAATCAAGTGGA
GCTCCAGCTTCATGGTGCCAAAAACACTGGATTCATTGGAGGTGCTTATTTTCTGCATTTCGTGTGGAAG
CTCAACTTCGAGAACTAATCAGGAAGCTTAAACAGCAAAGTGATTTCCCAAAAGAGACCTTTGAAGGCCC
TAAACATGAAGTACTACGAAGATGTCTTTGTGCGGGCTATTTCAAAAATGTAGCTCGAAGATCTGTTGGG
AGAACGTTTTGCACAATGGATGGTCGTGGAAGCCCAGTTCACATTCATCCTTCCTCAGCACTTCATGAAC
AGGAAACCAAACTTGAATGGATCATTTTTCATGAGGTATTGGTTACCACCAAAGTCTACGCAAGAATTGT
ATGCCCAATCCGTTATGAATGGGTAAGAGACTTGTTACCCAAGTTGCATGAATTTAATGCACATGATTTG
AGCAGTGTGGCCCGACGTGAAGTGAGAGAAGATGCAAGAAGGAGATGGACAAATAAGGAAAATGTAAAGC
AGCTAAAGGATGGAATATCGAAAGACGTCTTAAAGAAAATGCAAAGAAGAAATGATGACAAATCCATATC
TGATGCACGGGCTCGTTTCCTTGAGAGAAAGCAGCAGAGGACCCAGGACCACAGTGACACACGAAAGGAA
ACAGGCTAA

Translation (702 aa):
MSRFPAVAGRAPRRQEEGERSRDLQEERLSAVCIADREEKGCTSQEGGTTPTFPIQKQRKKIIQAETAIK
YMTDGCLLKHILGDPNLTKFSVIILDEAHERTLTTDILFGLLKKLFQEKSPNRKEHLKVVVMSATMELAK
LSAFFGNCPIFDIPGRLYPVREKFCNLIGPRDRENTAYIQAIVKVTMDIHLNEMAGDILVFLTGQFEIEK
SCELLFQMAESVDYDYDVQDTTLDGLLILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGI
RYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQRSGRAGRTSSGKCFRIYSKDFWNQCMPDHVIPEIK
RTSLTSVVLTLKCLAIHDVIRFPYLDPPNERLILEALKQLYQCDAIDRSGHVTRLGLSMVEFPLPPHLTC
AVIKAASLDCEDLLLPIAAMLSVENVFIRPVDPEYQKEAEQRHRELAAKAGGFNDFATLAVIFEQCKSSG
APASWCQKHWIHWRCLFSAFRVEAQLRELIRKLKQQSDFPKETFEGPKHEVLRRCLCAGYFKNVARRSVG
RTFCTMDGRGSPVHIHPSSALHEQETKLEWIIFHEVLVTTKVYARIVCPIRYEWVRDLLPKLHEFNAHDL
SSVARREVREDARRRWTNKENVKQLKDGISKDVLKKMQRRNDDKSISDARARFLERKQQRTQDHSDTRKE
TG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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