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Report for CCDS25353.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25353.1 Public Mus musculus 11 Zpbp2 23 108 98 CCDS HistoryNCBI Gene:69376Re-query CCDS DB by CCDS ID:25353.1Re-query CCDS DB by GeneID:69376See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25353.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017339.11 ENSMUSP00000017339.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017339.11Link to Ensembl Protein Viewer:ENSMUSP00000017339.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000017339Re-query CCDS DB by Protein ID:ENSMUSP00000017339
Original member Current member NCBI NM_027061.2 NP_081337.2 Accepted alive Link to Nucleotide Sequence:NM_027061.2Link to Protein Sequence:NP_081337.2Re-query CCDS DB by Nucleotide ID:NM_027061Re-query CCDS DB by Protein ID:NP_081337Link to BLAST:NP_081337.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081337.2 326 Q6X786-1 326 100% 0 0

Chromosomal Locations for CCDS 25353.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 98551274 98551322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98551443 98551508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98552458 98552583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98553823 98553984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98554551 98554769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98555487 98555569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98557498 98557678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98558210 98558304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGCTTGCGTGGGCCCTACTCTACGCGGTGCTCTGGTCTCTCGCAGGAGTTGGATCGCAACGTTCTTCCT
TATTCAATATCAAAGGCTTTGTTTACGGCACGGTAGGGCACCCAGTAAAAATATATGTAAAGTTACATCA
GGCTAGTCCTGTCCTTATTTGTATGGATATTGATCGTGCCAATAAAGAAACAGTGGACCCCACCTATTTA
TGGACTGGGCCAAATGAAAACACATTAAAAGGGAATAGCCAGATAAATATAACAAACACAGGAGAACTGG
TACTGAAGGATTTCCTGGAGCCGTTATCTGGACTTTACTCATGTATGCTTTCCTATAAGACTATCAAAGC
AGAAACCCAAGAAGAAACTATGATAAAGAAGAAATATGACTTTCTGGTCTTTGCATATCGGGAACCTGAT
TATTCTTACCACATGGCCGTGCGTTTTACCACAGGATCTTGTGTAGGAAGACACAATGACCTGCTCTTTA
GAGTGCTGAAGAAAATCTTGGATAACTTAATCTCTGATTTATTGTGCCATGTCATAGAGCCATCATACAA
ATGCCATTTTGTTAAACTTCCAGAGAGGGACTTCCTGTATGAGCTGTTCATAGCCTTTCAAGTGAATCCT
TTCGCACCGGGCTGGAGAAGTTTGTGCAACCGCTCTGCTGACTGTGAAGACATCACGAATCACAACGTCC
TCAAGGCGAGAGATCGGATGGAAGAATTTTTTCGGAAACAAGCACACATTCTACACCATCACTTCAACAG
AACGGTCCCAGCTATGCACTTTGTGGACCACAGTTTTCAAGTAACACGGATAGACAATTGTCGACCAGGC
TTTGGGAAAAACGAAGGTCTGCACAGCAATTGTGCTACCTGTTGCGTGGTCTGTAGTCCTGGAACGTTCA
GTCCCGATGTGGATGTCACCTGTCAGATCTGTGTTTCTGTCCATATCTATGGAGCTAAAGCTTGCCCATA
A

Translation (326 aa):
MLAWALLYAVLWSLAGVGSQRSSLFNIKGFVYGTVGHPVKIYVKLHQASPVLICMDIDRANKETVDPTYL
WTGPNENTLKGNSQINITNTGELVLKDFLEPLSGLYSCMLSYKTIKAETQEETMIKKKYDFLVFAYREPD
YSYHMAVRFTTGSCVGRHNDLLFRVLKKILDNLISDLLCHVIEPSYKCHFVKLPERDFLYELFIAFQVNP
FAPGWRSLCNRSADCEDITNHNVLKARDRMEEFFRKQAHILHHHFNRTVPAMHFVDHSFQVTRIDNCRPG
FGKNEGLHSNCATCCVVCSPGTFSPDVDVTCQICVSVHIYGAKACP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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