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Report for CCDS54986.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54986.1 Public Homo sapiens 6 LST1 24 110 108 CCDS HistoryNCBI Gene:7940Re-query CCDS DB by CCDS ID:54986.1Re-query CCDS DB by GeneID:7940See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54986.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000303757.12 ENSP00000303649.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000303757.12Link to Ensembl Protein Viewer:ENSP00000303649.7Re-query CCDS DB by Nucleotide ID:ENST00000303757Re-query CCDS DB by Protein ID:ENSP00000303649
Original member Current member NCBI NM_205840.2 NP_995312.2 Accepted alive Link to Nucleotide Sequence:NM_205840.2Link to Protein Sequence:NP_995312.2Re-query CCDS DB by Nucleotide ID:NM_205840Re-query CCDS DB by Protein ID:NP_995312Link to BLAST:NP_995312.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_995312.2 59 O00453-5 59 100% 0 0

Chromosomal Locations for CCDS 54986.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 31587300 31587318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31587641 31587733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31588518 31588585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (180 nt):
ATGTTATCGCGGAATGATGATATATGTATCTACGGGGGCCTGGGGCTGGGCGGGCTCCTGCTTCTGGCAG
TGGTCCTTCTGTCCGCCTGCCTGTGTTGGCTGCATCGAAGAGGCCCAGGGCTCCTCAGAGCAGGAACTCC
ACTATGCATCTCTGCAGAGGCTGCCAGTGCCCAGCAGTGA

Translation (59 aa):
MLSRNDDICIYGGLGLGGLLLLAVVLLSACLCWLHRRGPGLLRAGTPLCISAEAASAQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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