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Report for CCDS53070.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53070.1 Public Mus musculus X Pabir2 23 108 98 CCDS HistoryNCBI Gene:78755Re-query CCDS DB by CCDS ID:53070.1Re-query CCDS DB by GeneID:78755See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53070.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114838.7 ENSMUSP00000110487.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114838.7Link to Ensembl Protein Viewer:ENSMUSP00000110487.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114838Re-query CCDS DB by Protein ID:ENSMUSP00000110487
Original member Current member NCBI NM_001166365.2 NP_001159837.2 Accepted alive Link to Nucleotide Sequence:NM_001166365.2Link to Protein Sequence:NP_001159837.2Re-query CCDS DB by Nucleotide ID:NM_001166365Re-query CCDS DB by Protein ID:NP_001159837Link to BLAST:NP_001159837.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159837.2 255 Q6NZE7-1 255 100% 0 0

Chromosomal Locations for CCDS 53070.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 53246146 53246290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53254036 53254132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53258957 53259018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53259841 53259926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53260195 53260296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53260546 53260600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53260690 53260733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53266041 53266119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 53268876 53268973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (768 nt):
ATGGCTCAGGAGAAAATGGATCTGGATTTTGAGGCTGACACATCTGAGGGGGCCACCCTGAGACGGTCCA
ACAGTGCTCCCCTGATCCATGTGCTCAGTGACCTTTCACAGGTTTTTGAGCCATATCCACTTAGAACTGG
GAGGACCAGTACGGCAATTATGAGCCATCATAGCTTGGAAGAAGGCCTGGATATGATGAACAGAGAAACT
ACAAATGAAAGGGAAGCACAAGCAGGGATGCAGATAAGCCAGTCATGGGACGAAAGCCTGAGCCTGAGTG
ATAGTGATTTTGACAAGCCAGAGAAATTATATTCTCCCAAAAGAATTGACTTCACTCCAGTTTCTCCAGC
TCCTTCCCCAACCAGAGGATTTGGAAAGCAATGCTTGTCGCCATCCTTGCAAATGTTTGTGAGCAGCAGC
GGGATGCCACCGAGTCCTGTTCTCAATCCAAGACATTTTTCAAGGAGGAGCCAGAGCCCGGTCAAGTGCA
TTAGGCCCAGTGTTCTTGGTCCTCTTAAGAGAAAAGGGGAAATGGAGATGGAAAGCCAGCCTAAGAGACC
CTTCCAAGGCACCACCAGCATGCTGTCTACCAATCCTGCACAATTGTCTGATTTCAGTTCATGTTCAGAT
ATTTTGGATGGCAGTAGTATCAGCAGTGGCTTGTCCTCAGACTCACTGGCTACAGGCAGCGCTCCCGCAG
AGTCTCCAGTAGCATGCTCCAATTCATGCTCTCCGTTCATCTTGATGGATGATCTCTCACCCAAGTGA

Translation (255 aa):
MAQEKMDLDFEADTSEGATLRRSNSAPLIHVLSDLSQVFEPYPLRTGRTSTAIMSHHSLEEGLDMMNRET
TNEREAQAGMQISQSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKQCLSPSLQMFVSSS
GMPPSPVLNPRHFSRRSQSPVKCIRPSVLGPLKRKGEMEMESQPKRPFQGTTSMLSTNPAQLSDFSSCSD
ILDGSSISSGLSSDSLATGSAPAESPVACSNSCSPFILMDDLSPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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