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Report for CCDS53073.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53073.1 Public Mus musculus X Gm16430 23 108 98 CCDS HistoryNCBI Gene:100040894Re-query CCDS DB by CCDS ID:53073.1Re-query CCDS DB by GeneID:100040894See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53073.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169006.2 ENSMUSP00000132567.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169006.2Link to Ensembl Protein Viewer:ENSMUSP00000132567.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000169006Re-query CCDS DB by Protein ID:ENSMUSP00000132567
Original member Current member EBI ENSMUST00000178145.7 ENSMUSP00000136901.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178145.7Link to Ensembl Protein Viewer:ENSMUSP00000136901.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178145Re-query CCDS DB by Protein ID:ENSMUSP00000136901
Original member Current member NCBI NM_001166601.1 NP_001160073.1 Accepted alive Link to Nucleotide Sequence:NM_001166601.1Link to Protein Sequence:NP_001160073.1Re-query CCDS DB by Nucleotide ID:NM_001166601Re-query CCDS DB by Protein ID:NP_001160073Link to BLAST:NP_001160073.1

Chromosomal Locations for CCDS 53073.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 54623800 54623908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54629744 54629869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54630180 54630243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54635757 54635856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54638801 54638869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (468 nt):
ATGGCTCTTAAGAAACTGTGGGCGATACCAAAGGACGGTTACTTATTACTTCTTGACTATGATGATGAAG
ACGATGACATAAATTTTTTGGAGGAGGCTCATTCTGAAGAAAACGTAAGTTTCTCAGAGGAATGGCAGCG
TTTTGCAAGTTCTGTAGAGACACCAATAGAAAACAGGAATTTGTTAAGTGGTGAACAGCAAGATGGGAAT
GCTTCAAAATTGGATCTTATGGAAGAACAGAATCCAGTAACTCATGATGATGAGAATGAAATTCCTGAAG
AAATCGTTGGAGATACACGGGAGATGATCAACAACAAGTCGTGTGAGCAGTATAAAACTACATTTCAGAA
GTTTGATATGGATGTCCAGAATTTCAATGAACAACAAGAAAAATCAGTGGGTTTGATGAACTTGGAGACC
AACAACTCCGATATGCTTTTTGATGTAGATGGTGAATTGAGAAAATGA

Translation (155 aa):
MALKKLWAIPKDGYLLLLDYDDEDDDINFLEEAHSEENVSFSEEWQRFASSVETPIENRNLLSGEQQDGN
ASKLDLMEEQNPVTHDDENEIPEEIVGDTREMINNKSCEQYKTTFQKFDMDVQNFNEQQEKSVGLMNLET
NNSDMLFDVDGELRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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