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Report for CCDS14517.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14517.1 Public Homo sapiens X IL1RAPL2 24 110 108 CCDS HistoryNCBI Gene:26280Re-query CCDS DB by CCDS ID:14517.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14517.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372582.6 ENSP00000361663.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372582.6Link to Ensembl Protein Viewer:ENSP00000361663.1Re-query CCDS DB by Nucleotide ID:ENST00000372582Re-query CCDS DB by Protein ID:ENSP00000361663
Original member Current member NCBI NM_017416.2 NP_059112.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017416.2Link to Protein Sequence:NP_059112.1Re-query CCDS DB by Nucleotide ID:NM_017416Re-query CCDS DB by Protein ID:NP_059112Link to BLAST:NP_059112.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059112.1 686 Q9NP60 686 100% 0 0

Chromosomal Locations for CCDS 14517.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 104658914 104658995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 105195475 105195748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 105233818 105234004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 105267388 105267541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 105484313 105484387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 105717367 105717496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 105740546 105740691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 105748960 105749103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 105755177 105755347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 105766964 105767661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2061 nt):
ATGAAGCCACCATTTCTTTTGGCCCTTGTGGTCTGTTCTGTAGTCAGCACAAATCTGAAGATGGTGTCAA
AGAGAAATTCTGTGGATGGCTGCATTGACTGGTCAGTGGATCTCAAGACATACATGGCTTTGGCAGGTGA
ACCAGTCCGAGTGAAATGTGCCCTTTTCTACAGTTATATTCGTACCAACTATAGCACGGCCCAGAGCACT
GGGCTCAGGCTTATGTGGTACAAAAACAAAGGTGATTTGGAAGAGCCCATCATCTTTTCAGAGGTCAGGA
TGAGCAAAGAGGAAGATTCAATATGGTTTCACTCAGCTGAGGCACAAGACAGTGGATTCTACACTTGTGT
TTTAAGAAACTCAACATATTGCATGAAGGTGTCAATGTCCTTGACTGTTGCAGAGAATGAATCAGGCCTG
TGCTACAACAGCAGGATCCGCTATTTAGAAAAATCTGAAGTCACTAAAAGAAAGGAGATCTCCTGTCCAG
ACATGGATGACTTTAAAAAGTCCGATCAGGAGCCTGATGTTGTGTGGTATAAGGAATGCAAGCCAAAAAT
GTGGAGAAGCATAATAATACAGAAAGGAAATGCTCTTCTGATCCAAGAAGTTCAAGAAGAAGATGGAGGA
AATTACACATGTGAACTTAAATATGAAGGAAAACTTGTAAGACGAACAACTGAATTGAAAGTTACAGCTT
TACTCACAGACAAGCCTCCCAAGCCATTGTTCCCCATGGAGAATCAGCCAAGTGTTATAGATGTCCAGCT
GGGTAAGCCTCTGAACATCCCCTGCAAAGCATTCTTCGGATTCAGTGGAGAGTCTGGGCCAATGATCTAC
TGGATGAAAGGAGAAAAGTTTATTGAAGAACTGGCAGGTCACATTAGAGAAGGTGAAATAAGGCTTCTCA
AAGAGCATCTTGGAGAAAAAGAAGTTGAATTGGCACTCATCTTTGACTCAGTTGTGGAAGCTGACCTGGC
GAATTATACCTGCCATGTTGAAAACCGAAATGGACGGAAACATGCCAGTGTTTTGCTGCGTAAAAAGGAT
TTAATCTATAAAATTGAGCTTGCAGGGGGCCTGGGAGCAATCTTCCTCCTCCTTGTACTGCTGGTGGTCA
TTTACAAATGCTACAACATTGAATTGATGCTCTTCTACAGGCAGCACTTTGGAGCTGATGAAACTAATGA
TGACAACAAGGAATATGATGCCTATCTCTCTTACACAAAAGTGGACCAAGATACTTTAGACTGTGACAAT
CCTGAAGAAGAGCAGTTTGCTCTTGAAGTACTGCCAGATGTCCTGGAAAAACACTATGGATATAAACTCT
TCATCCCAGAAAGAGACCTGATTCCAAGTGGAACATACATGGAAGATCTCACAAGATATGTTGAACAAAG
CAGAAGACTTATTATCGTGCTAACTCCAGACTATATTCTCAGACGGGGATGGAGTATTTTCGAACTGGAA
AGCAGACTCCATAACATGCTAGTCAGTGGAGAAATCAAAGTGATTTTGATTGAGTGTACAGAATTAAAAG
GGAAAGTGAATTGCCAGGAAGTGGAATCACTAAAGCGTAGCATCAAACTTCTGTCCCTGATCAAGTGGAA
GGGATCCAAAAGCAGCAAATTAAATTCTAAGTTTTGGAAGCACTTAGTATATGAAATGCCCATCAAGAAA
AAAGAAATGCTACCTCGGTGCCATGTTCTGGACTCCGCAGAACAAGGACTTTTTGGAGAACTCCAGCCTA
TACCCTCTATTGCCATGACCAGTACTTCAGCCACTCTGGTGTCATCTCAGGCTGATCTCCCTGAATTCCA
CCCTTCAGATTCAATGCAAATCAGGCACTGTTGCAGAGGTTATAAACATGAGATACCAGCCACGACCTTG
CCAGTACCTTCCTTAGGCAACCACCATACTTATTGTAACCTGCCTCTGACGCTACTCAACGGACAGCTAC
CCCTTAATAACACCCTGAAAGATACCCAGGAATTTCACAGGAACAGTTCTTTGCTGCCTTTATCCTCCAA
AGAGCTTAGCTTTACCAGTGATATTTGGTAG

Translation (686 aa):
MKPPFLLALVVCSVVSTNLKMVSKRNSVDGCIDWSVDLKTYMALAGEPVRVKCALFYSYIRTNYSTAQST
GLRLMWYKNKGDLEEPIIFSEVRMSKEEDSIWFHSAEAQDSGFYTCVLRNSTYCMKVSMSLTVAENESGL
CYNSRIRYLEKSEVTKRKEISCPDMDDFKKSDQEPDVVWYKECKPKMWRSIIIQKGNALLIQEVQEEDGG
NYTCELKYEGKLVRRTTELKVTALLTDKPPKPLFPMENQPSVIDVQLGKPLNIPCKAFFGFSGESGPMIY
WMKGEKFIEELAGHIREGEIRLLKEHLGEKEVELALIFDSVVEADLANYTCHVENRNGRKHASVLLRKKD
LIYKIELAGGLGAIFLLLVLLVVIYKCYNIELMLFYRQHFGADETNDDNKEYDAYLSYTKVDQDTLDCDN
PEEEQFALEVLPDVLEKHYGYKLFIPERDLIPSGTYMEDLTRYVEQSRRLIIVLTPDYILRRGWSIFELE
SRLHNMLVSGEIKVILIECTELKGKVNCQEVESLKRSIKLLSLIKWKGSKSSKLNSKFWKHLVYEMPIKK
KEMLPRCHVLDSAEQGLFGELQPIPSIAMTSTSATLVSSQADLPEFHPSDSMQIRHCCRGYKHEIPATTL
PVPSLGNHHTYCNLPLTLLNGQLPLNNTLKDTQEFHRNSSLLPLSSKELSFTSDIW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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